SMTL ID : 4y7p.1 (1 other biounit)

Structure of alkaline D-peptidase from Bacillus cereus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 4 residues within 4Å: Chain A: I.230, E.234, L.235, S.236 No protein-ligand interaction detected (PLIP) SCN.2: 5 residues within 4Å: Chain A: A.118, L.125, Q.305, Q.306, Q.309 No protein-ligand interaction detected (PLIP) SCN.3: 5 residues within 4Å: Chain A: K.54, V.57, R.58, Y.81, A.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.58, A:A.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakano, S. et al., Structural and computational analysis of peptide recognition mechanism of class-C type penicillin binding protein, alkaline D-peptidase from Bacillus cereus DF4-B. Sci Rep (2015)

Release Date

2015-10-14

Peptides

Alkaline D-peptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alkaline D-peptidase

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