SMTL ID : 4yag.1

Crystal structure of LigL in complex with NADH from Sphingobium sp. strain SYK-6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 34 residues within 4Å: Chain A: G.12, A.14, S.15, G.16, I.17, G.18, D.36, I.37, R.38, H.41, L.63, D.64, V.65, S.66, N.91, A.92, G.93, I.94, I.114, T.142, A.143, S.144, L.145, Y.158, K.162, P.188, G.189, P.190, I.191, S.193, R.194, I.195, N.201, P.203 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:P.188 Hydrogen bonds: A:S.15, A:I.17, A:D.36, A:I.37, A:H.41, A:D.64, A:V.65, A:N.91, A:K.162, A:I.191, A:I.191, A:S.193, A:S.193, A:R.194, A:N.201 Water bridges: A:G.18, A:N.91, A:S.193, A:N.201, A:N.201, A:R.222 NAI.2: 34 residues within 4Å: Chain B: G.12, A.14, S.15, G.16, I.17, G.18, D.36, I.37, R.38, H.41, L.63, D.64, V.65, S.66, N.91, A.92, G.93, I.94, I.114, T.142, A.143, S.144, L.145, Y.158, K.162, P.188, G.189, P.190, I.191, S.193, R.194, I.195, N.201, P.203 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:P.188 Hydrogen bonds: B:S.15, B:I.17, B:D.36, B:I.37, B:H.41, B:D.64, B:V.65, B:A.92, B:K.162, B:I.191, B:I.191, B:S.193, B:S.193, B:R.194, B:N.201 Water bridges: B:G.18, B:N.91, B:S.193, B:S.198, B:N.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pereira, J.H. et al., Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin beta-Aryl Ether Cleavage Pathway from Sphingobium sp. SYK-6. J.Biol.Chem. (2016)

Release Date

2016-03-09

Peptides

C alpha-dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C alpha-dehydrogenase

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