SMTL ID : 4yar.1 (1 other biounit)

2-Hydroxyethylphosphonate dioxygenase (HEPD) E176H

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

10 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: H.129, H.182 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.129, A:H.182, H2O.4, H2O.4, H2O.4, H2O.5 CD.2: 2 residues within 4Å: Chain A: D.66, R.107 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.66, A:D.66 CD.3: 1 residues within 4Å: Chain A: H.75 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.75 CD.4: 1 residues within 4Å: Chain A: E.131 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.131, A:E.131 CD.5: 2 residues within 4Å: Chain A: D.32, E.43 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.32, A:D.32, H2O.1, H2O.1, H2O.1 CD.6: 1 residues within 4Å: Chain A: H.94 No protein-ligand interaction detected (PLIP) CD.7: 5 residues within 4Å: Chain A: D.142, H.160, A.161, H.163 Ligands: ACT.13 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.142, A:D.142, A:H.160, A:H.163, ACT.13 CD.8: 2 residues within 4Å: Chain A: D.189 Ligands: CD.10 No protein-ligand interaction detected (PLIP) CD.9: 1 residues within 4Å: Chain A: E.80 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.80, A:E.80, H2O.8 CD.10: 2 residues within 4Å: Chain A: D.189 Ligands: CD.8 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.189

1 x NA: SODIUM ION(Non-functional Binders)

NA.11: 2 residues within 4Å: Chain A: Q.296, H.330 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.296, A:Q.296, A:K.302

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.12: 3 residues within 4Å: Chain A: A.9, H.10, N.13 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.10 ACT.13: 4 residues within 4Å: Chain A: D.142, H.160, H.163 Ligands: CD.7 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.160, A:H.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peck, S.C. et al., A Common Late-Stage Intermediate in Catalysis by 2-Hydroxyethyl-phosphonate Dioxygenase and Methylphosphonate Synthase. J.Am.Chem.Soc. (2015)

Release Date

2015-03-04

Peptides

2-hydroxyethylphosphonate dioxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2-hydroxyethylphosphonate dioxygenase

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