- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 6 x HIS: HISTIDINE(Non-covalent)
HIS.2: 16 residues within 4Å:- Chain A: Y.229, G.248, V.249, E.250, R.251, P.252, T.253, H.267, M.268, V.269
- Chain E: M.231, L.232, H.233, L.257, S.289, L.291
12 PLIP interactions:8 interactions with chain A, 3 interactions with chain E, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:Y.229
- Hydrogen bonds: A:V.249, A:E.250, A:R.251, A:T.253, A:T.253, A:V.269, E:S.289
- Water bridges: A:Y.229
- Salt bridges: E:H.233, H.2
- pi-Cation interactions: E:H.233
HIS.6: 15 residues within 4Å:- Chain B: Y.229, G.248, V.249, E.250, R.251, P.252, T.253, H.267, M.268, V.269
- Chain C: M.231, H.233, L.257, S.289, L.291
14 PLIP interactions:9 interactions with chain B, 3 interactions with chain C, 2 Ligand-Ligand interactions- Hydrophobic interactions: B:Y.229
- Hydrogen bonds: B:V.249, B:E.250, B:R.251, B:R.251, B:R.251, B:T.253, B:T.253, B:V.269, C:S.289, H.6
- Salt bridges: C:H.233, H.6
- pi-Cation interactions: C:H.233
HIS.10: 16 residues within 4Å:- Chain C: Y.229, G.248, V.249, E.250, R.251, P.252, T.253, H.267, M.268, V.269
- Chain F: M.231, L.232, H.233, L.257, S.289, L.291
15 PLIP interactions:10 interactions with chain C, 3 interactions with chain F, 2 Ligand-Ligand interactions- Hydrophobic interactions: C:Y.229
- Hydrogen bonds: C:V.249, C:E.250, C:R.251, C:R.251, C:T.253, C:T.253, C:T.253, C:V.269, F:S.289, H.10
- Water bridges: C:Y.229
- Salt bridges: F:H.233, H.10
- pi-Cation interactions: F:H.233
HIS.15: 16 residues within 4Å:- Chain A: M.231, L.232, H.233, L.257, S.289, L.291
- Chain D: Y.229, G.248, V.249, E.250, R.251, P.252, T.253, H.267, M.268, V.269
12 PLIP interactions:1 Ligand-Ligand interactions, 3 interactions with chain A, 8 interactions with chain D- Salt bridges: H.15, A:H.233
- Hydrogen bonds: A:S.289, D:V.249, D:E.250, D:R.251, D:T.253, D:T.253, D:T.253, D:V.269
- pi-Cation interactions: A:H.233
- Hydrophobic interactions: D:Y.229
HIS.19: 16 residues within 4Å:- Chain D: M.231, L.232, H.233, L.257, S.289, L.291
- Chain E: Y.229, G.248, V.249, E.250, R.251, P.252, T.253, H.267, M.268, V.269
13 PLIP interactions:9 interactions with chain E, 1 Ligand-Ligand interactions, 3 interactions with chain D- Hydrophobic interactions: E:Y.229
- Hydrogen bonds: E:V.249, E:E.250, E:R.251, E:T.253, E:T.253, E:T.253, E:V.269, D:S.289
- Water bridges: E:Y.229
- Salt bridges: H.19, D:H.233
- pi-Cation interactions: D:H.233
HIS.25: 16 residues within 4Å:- Chain B: M.231, L.232, H.233, L.257, S.289, L.291
- Chain F: Y.229, G.248, V.249, E.250, R.251, P.252, T.253, H.267, M.268, V.269
14 PLIP interactions:9 interactions with chain F, 3 interactions with chain B, 2 Ligand-Ligand interactions- Hydrophobic interactions: F:Y.229
- Hydrogen bonds: F:V.249, F:E.250, F:R.251, F:R.251, F:T.253, F:T.253, F:T.253, F:V.269, B:S.289, H.25
- Salt bridges: B:H.233, H.25
- pi-Cation interactions: B:H.233
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 4 residues within 4Å:- Chain A: R.106, E.185, V.186, V.188
No protein-ligand interaction detected (PLIP)PEG.7: 3 residues within 4Å:- Chain B: R.106, V.186, V.188
No protein-ligand interaction detected (PLIP)PEG.11: 3 residues within 4Å:- Chain C: R.106, E.185, V.186
No protein-ligand interaction detected (PLIP)PEG.16: 3 residues within 4Å:- Chain D: R.106, E.185, V.186
1 PLIP interactions:1 interactions with chain D- Water bridges: D:V.188
PEG.20: 4 residues within 4Å:- Chain E: R.106, E.185, V.186, V.188
1 PLIP interactions:1 interactions with chain E- Water bridges: E:V.188
PEG.26: 4 residues within 4Å:- Chain F: R.106, E.185, V.186, V.188
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:R.106
- Water bridges: F:V.188
- 9 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.4: 3 residues within 4Å:- Chain A: D.57, N.81, E.84
6 PLIP interactions:1 interactions with chain A, 5 Ligand-Water interactions- Metal complexes: A:D.57, H2O.5, H2O.5, H2O.5, H2O.5, H2O.5
MG.8: 2 residues within 4Å:- Chain B: D.57, E.84
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.57, H2O.7, H2O.9
MG.12: 3 residues within 4Å:- Chain C: D.57, N.81, E.84
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:D.57, H2O.14, H2O.14, H2O.14, H2O.14
MG.13: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.17: 2 residues within 4Å:- Chain D: D.57, E.84
6 PLIP interactions:1 interactions with chain D, 5 Ligand-Water interactions- Metal complexes: D:D.57, H2O.19, H2O.19, H2O.19, H2O.19, H2O.19
MG.21: 2 residues within 4Å:- Chain E: D.57, E.84
6 PLIP interactions:1 interactions with chain E, 5 Ligand-Water interactions- Metal complexes: E:D.57, H2O.23, H2O.23, H2O.23, H2O.23, H2O.23
MG.22: 5 residues within 4Å:- Chain E: A.224, E.226, S.227, K.228, I.295
4 PLIP interactions:1 interactions with chain E, 3 Ligand-Water interactions- Metal complexes: E:S.227, H2O.20, H2O.22, H2O.23
MG.23: 1 residues within 4Å:- Ligands: AMP.18
No protein-ligand interaction detected (PLIP)MG.27: 2 residues within 4Å:- Chain F: D.57, E.84
4 PLIP interactions:1 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:D.57, H2O.27, H2O.27, H2O.27
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mittelstadt, G. et al., Campylobacter jejuni adenosine triphosphate phosphoribosyltransferase is an active hexamer that is allosterically controlled by the twisting of a regulatory tail. Protein Sci. (2016)
- Release Date
- 2016-03-09
- Peptides
- ATP phosphoribosyltransferase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 6 x HIS: HISTIDINE(Non-covalent)
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 9 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mittelstadt, G. et al., Campylobacter jejuni adenosine triphosphate phosphoribosyltransferase is an active hexamer that is allosterically controlled by the twisting of a regulatory tail. Protein Sci. (2016)
- Release Date
- 2016-03-09
- Peptides
- ATP phosphoribosyltransferase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F