SMTL ID : 4ybz.1

Ca. Korarchaeum cryptofilum dinucleotide forming Acetyl-coenzyme A synthetase 1 in complex with ADP and with phosphorylated phosphohistidine segment (site I orientation)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: H.254 Chain C: G.308, D.351, T.353, G.354 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.351 MG.2: 3 residues within 4Å: Chain A: G.308, G.354 Chain C: H.254 5 PLIP interactions: 4 Ligand-Water interactions, 1 interactions with chain C Metal complexes: H2O.4, H2O.4, H2O.8, H2O.14, C:H.254

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 17 residues within 4Å: Chain D: T.35, V.58, K.60, H.68, K.69, S.70, V.75, V.77, Q.111, E.112, F.113, A.114, E.119, P.212, V.223, D.224, R.226 16 PLIP interactions: 14 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:K.60, D:K.69, D:S.70, D:S.70, D:E.112, D:A.114, D:D.224, D:D.224 Water bridges: D:K.69, D:R.226, B:R.178, B:R.178 Salt bridges: D:K.60, D:K.69, D:K.69, D:R.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weie, R.H. et al., Structure of NDP-forming Acetyl-CoA synthetase ACD1 reveals a large rearrangement for phosphoryl transfer. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-01-27

Peptides

alpha subunit of Acyl-CoA synthetase (NDP forming): AC
beta subunit of Acyl-CoA synthetase (NDP forming): BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

alpha subunit of Acyl-CoA synthetase (NDP forming)

beta subunit of Acyl-CoA synthetase (NDP forming)

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