SMTL ID : 4ycd.1

Structure of a single tryptophan mutant of Acetobacter aceti PurE with Y154F

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-octamer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: N.156, A.158, L.159, R.162 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.156, A:N.156, A:L.159 Water bridges: A:R.162, A:R.162 Salt bridges: A:R.162 ACT.10: 4 residues within 4Å: Chain C: N.156, A.158, L.159, R.162 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.156, C:N.156, C:L.159 Water bridges: C:R.162, C:R.162 Salt bridges: C:R.162 ACT.19: 4 residues within 4Å: Chain E: N.156, A.158, L.159, R.162 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:N.156, E:N.156, E:L.159 Water bridges: E:R.162, E:R.162 Salt bridges: E:R.162 ACT.28: 4 residues within 4Å: Chain G: N.156, A.158, L.159, R.162 6 PLIP interactions: 6 interactions with chain G Hydrogen bonds: G:N.156, G:N.156, G:L.159 Water bridges: G:R.162, G:R.162 Salt bridges: G:R.162

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: P.175, N.176, S.177 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: S.58, A.59, H.60 Chain H: P.126 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: K.142 Chain E: R.61 Ligand excluded by PLIP SO4.7: 5 residues within 4Å: Chain B: G.30, S.58, A.59, H.60 Chain E: P.126 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain B: N.156, A.158, L.159, R.162 Ligand excluded by PLIP SO4.9: 1 residues within 4Å: Chain B: R.39 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain C: P.175, N.176, S.177 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain C: S.58, A.59, H.60 Chain F: P.126 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain C: K.142 Chain G: R.61 Ligand excluded by PLIP SO4.16: 5 residues within 4Å: Chain D: G.30, S.58, A.59, H.60 Chain G: P.126 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain D: N.156, A.158, L.159, R.162 Ligand excluded by PLIP SO4.18: 1 residues within 4Å: Chain D: R.39 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain E: P.175, N.176, S.177 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain B: P.126 Chain E: S.58, A.59, H.60 Ligand excluded by PLIP SO4.22: 2 residues within 4Å: Chain C: R.61 Chain E: K.142 Ligand excluded by PLIP SO4.25: 5 residues within 4Å: Chain C: P.126 Chain F: G.30, S.58, A.59, H.60 Ligand excluded by PLIP SO4.26: 4 residues within 4Å: Chain F: N.156, A.158, L.159, R.162 Ligand excluded by PLIP SO4.27: 1 residues within 4Å: Chain F: R.39 Ligand excluded by PLIP SO4.29: 3 residues within 4Å: Chain G: P.175, N.176, S.177 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain D: P.126 Chain G: S.58, A.59, H.60 Ligand excluded by PLIP SO4.31: 2 residues within 4Å: Chain A: R.61 Chain G: K.142 Ligand excluded by PLIP SO4.34: 5 residues within 4Å: Chain A: P.126 Chain H: G.30, S.58, A.59, H.60 Ligand excluded by PLIP SO4.35: 4 residues within 4Å: Chain H: N.156, A.158, L.159, R.162 Ligand excluded by PLIP SO4.36: 1 residues within 4Å: Chain H: R.39 Ligand excluded by PLIP

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain B: T.62, P.63, D.64, R.65 Chain F: T.171 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain F Hydrogen bonds: B:D.64, B:D.64, B:R.65 Water bridges: F:T.171, F:T.171 EDO.6: 3 residues within 4Å: Chain B: G.137, A.138 Chain H: R.111 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain H Hydrogen bonds: B:A.138 Water bridges: B:T.37, B:T.37, B:E.109, B:I.136, B:S.139, H:R.111 EDO.14: 5 residues within 4Å: Chain D: T.62, P.63, D.64, R.65 Chain H: T.171 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain H Hydrogen bonds: D:D.64, D:D.64, D:R.65 Water bridges: H:T.171, H:T.171 EDO.15: 3 residues within 4Å: Chain D: G.137, A.138 Chain F: R.111 7 PLIP interactions: 6 interactions with chain D, 1 interactions with chain F Hydrogen bonds: D:A.138 Water bridges: D:T.37, D:T.37, D:E.109, D:I.136, D:S.139, F:R.111 EDO.23: 5 residues within 4Å: Chain D: T.171 Chain F: T.62, P.63, D.64, R.65 5 PLIP interactions: 3 interactions with chain F, 2 interactions with chain D Hydrogen bonds: F:D.64, F:D.64, F:R.65 Water bridges: D:T.171, D:T.171 EDO.24: 3 residues within 4Å: Chain B: R.111 Chain F: G.137, A.138 7 PLIP interactions: 5 interactions with chain F, 2 interactions with chain B Hydrogen bonds: F:A.138 Water bridges: F:T.37, F:T.37, F:I.136, F:S.139, B:R.111, B:R.111 EDO.32: 5 residues within 4Å: Chain B: T.171 Chain H: T.62, P.63, D.64, R.65 5 PLIP interactions: 3 interactions with chain H, 2 interactions with chain B Hydrogen bonds: H:D.64, H:D.64, H:R.65 Water bridges: B:T.171, B:T.171 EDO.33: 3 residues within 4Å: Chain D: R.111 Chain H: G.137, A.138 7 PLIP interactions: 5 interactions with chain H, 2 interactions with chain D Hydrogen bonds: H:A.138 Water bridges: H:T.37, H:T.37, H:I.136, H:S.139, D:R.111, D:R.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sullivan, K.L. et al., Structure of a single tryptophan mutant of Acetobacter aceti PurE. To Be Published

Release Date

2016-02-24

Peptides

N5-carboxyaminoimidazole ribonucleotide mutase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

N5-carboxyaminoimidazole ribonucleotide mutase