SMTL ID : 4ydg.1

Crystal structure of compound 10 in complex with HTLV-1 Protease

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.9 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.9 SO4.2: 3 residues within 4Å: Chain A: S.22, H.23, K.25 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.22 Salt bridges: A:H.23, A:K.25

1 x G3G: N,N'-(3S,4S)-PYRROLIDINE-3,4-DIYLBIS(4-AMINO-N-BENZYLBENZENESULFONAMIDE)(Non-covalent)

G3G.3: 16 residues within 4Å: Chain A: D.32, G.34, A.35, D.36, M.37, L.91, W.98, I.100 Chain B: D.32, G.34, A.35, D.36, M.37, L.57, W.98, I.100 14 PLIP interactions: 6 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:L.91, A:W.98, B:A.35, B:W.98, B:W.98 Hydrogen bonds: A:D.36, A:D.36, A:M.37, B:D.32, B:D.36, B:M.37, B:M.37 Salt bridges: A:D.32, B:D.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhnert, M. et al., Privileged Structures Meet Human T-Cell Leukemia Virus-1 (HTLV-1): C2-Symmetric 3,4-Disubstituted Pyrrolidines as Nonpeptidic HTLV-1 Protease Inhibitors. J.Med.Chem. (2015)

Release Date

2016-02-03

Peptides

HTLV-1 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HTLV-1 protease

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