SMTL ID : 4ye4.1

Crystal Structure of Neutralizing Antibody HJ16 in Complex with HIV-1 gp120

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

hetero-1-1-1-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.118, T.120, S.158 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.120 NAG.2: 10 residues within 4Å: Chain A: E.95, P.96, K.136, V.138, L.145, N.146, N.244, C.307, S.308, S.309 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.138, A:L.145 Hydrogen bonds: A:E.95, A:K.136, A:N.146, A:S.309 NAG.3: 3 residues within 4Å: Chain A: N.160 Chain C: A.32, P.33 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:N.160, C:P.33 NAG.4: 5 residues within 4Å: Chain A: A.152, E.153, V.154, N.173, K.216 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.154, A:N.173, A:K.216, A:K.216 NAG.5: 5 residues within 4Å: Chain A: E.177, N.179, N.200, R.306, S.308 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:N.200 Hydrogen bonds: A:E.177, A:E.177, A:N.179, A:N.200, A:R.306, A:R.306, A:S.308 NAG.6: 2 residues within 4Å: Chain A: N.253, T.255 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain A: T.255, Q.256, N.259 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Q.256 NAG.8: 3 residues within 4Å: Chain A: G.147, T.175, N.310 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.175 Hydrogen bonds: A:N.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, T. et al., Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors. Cell (2015)

Release Date

2015-07-22

Peptides

HT593.1 gp120: A
Heavy chain human antibody HJ16: B
Light chain of HJ16: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
L

HT593.1 gp120

Heavy chain human antibody HJ16

Light chain of HJ16