SMTL ID : 4yef.4 (6 other biounits)

beta1 carbohydrate binding module (CBM) of AMP-activated protein kinase (AMPK) in complex with glucosyl-beta-cyclododextrin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC- GLC- GLC- GLC: Cycloheptakis-(1-4)-(alpha-D-glucopyranose)(Non-covalent)

GLC-GLC-GLC-GLC-GLC-GLC-GLC.1: 9 residues within 4Å: Chain A: W.33, K.59, W.66, S.77, Q.78, L.79, T.81, N.83 Ligands: SO4.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.59, A:K.59 Water bridges: A:Q.65, A:V.82

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: Q.65 Ligands: GLC-GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC-GLC.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.65 Water bridges: A:W.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mobbs, J.I. et al., Determinants of oligosaccharide specificity of the carbohydrate-binding modules of AMP-activated protein kinase. Biochem.J. (2015)

Release Date

2015-06-24

Peptides

5'-AMP-activated protein kinase subunit beta-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

5'-AMP-activated protein kinase subunit beta-1

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