- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 4 x THM: THYMIDINE(Non-covalent)
THM.7: 9 residues within 4Å:- Chain A: S.86, T.87, Y.168, R.171, V.177, I.183, S.186, I.187, F.210
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:V.177, A:I.183, A:F.210, A:F.210
- Hydrogen bonds: A:S.86, A:T.87, A:R.171, A:R.171, A:S.186, A:S.186
- pi-Stacking: A:Y.168
THM.8: 9 residues within 4Å:- Chain A: S.248, S.249, V.254, R.257, E.258, Q.261, Y.267, T.384, D.385
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:S.248, A:S.249, A:S.249, A:R.257, A:Q.261, A:D.385
- pi-Stacking: A:Y.267
THM.17: 8 residues within 4Å:- Chain B: S.248, S.249, R.257, E.258, Q.261, Y.267, T.384, D.385
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:Y.267, B:Y.267
- Hydrogen bonds: B:S.248, B:D.385
- pi-Stacking: B:Y.267
THM.18: 12 residues within 4Å:- Chain B: H.85, S.86, T.87, Q.156, Y.168, R.171, V.177, I.183, S.186, I.187, K.190, F.210
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:Y.168, B:V.177, B:F.210
- Hydrogen bonds: B:Q.156, B:R.171, B:R.171, B:S.186, B:S.186
- pi-Stacking: B:Y.168
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.10: 3 residues within 4Å:- Chain A: D.138, R.141, K.321
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.138, A:R.141, A:K.321
EDO.11: 4 residues within 4Å:- Chain A: E.328, N.329, Y.330, D.331
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.331
EDO.19: 3 residues within 4Å:- Chain B: R.268, F.273, Q.301
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.268, B:Q.301
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Balaev, V.V. et al., Structural investigation of the thymidine phosphorylase from Salmonella typhimurium in the unliganded state and its complexes with thymidine and uridine. Acta Crystallogr.,Sect.F (2016)
- Release Date
- 2016-03-02
- Peptides
- Thymidine phosphorylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 4 x THM: THYMIDINE(Non-covalent)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Balaev, V.V. et al., Structural investigation of the thymidine phosphorylase from Salmonella typhimurium in the unliganded state and its complexes with thymidine and uridine. Acta Crystallogr.,Sect.F (2016)
- Release Date
- 2016-03-02
- Peptides
- Thymidine phosphorylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B