SMTL ID : 4ygm.2 (1 other biounit)

Vaccinia virus his-D4/A20(1-50) in complex with uracil

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Y.84, P.85, S.102, H.195 Ligands: SO4.2, URA.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.102 Water bridges: A:H.195 Salt bridges: A:H.195 SO4.2: 4 residues within 4Å: Chain A: T.99, K.100, K.101 Ligands: SO4.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.101 Water bridges: A:S.102 Salt bridges: A:K.101 SO4.3: 6 residues within 4Å: Chain A: G.173, K.174, T.175, Y.194, H.195, A.198 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.174, A:T.175, A:H.195 Water bridges: A:G.173, A:R.199

1 x URA: URACIL(Non-covalent)

URA.4: 9 residues within 4Å: Chain A: G.80, I.81, D.82, P.83, Y.84, P.92, F.93, N.134 Ligands: SO4.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:I.81, A:D.82, A:Y.84, A:F.93, A:N.134, A:N.134 Water bridges: A:D.82, A:H.195 pi-Stacking: A:Y.84, A:F.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burmeister, W.P. et al., Crystal Structure of the Vaccinia Virus Uracil-DNA Glycosylase in Complex with DNA. J.Biol.Chem. (2015)

Release Date

2015-06-10

Peptides

Uracil-DNA glycosylase: A
DNA polymerase processivity factor component A20: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Uracil-DNA glycosylase

DNA polymerase processivity factor component A20

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