SMTL ID : 4yiw.1

DIHYDROOROTASE FROM BACILLUS ANTHRACIS WITH SUBSTRATE BOUND

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.82, H.84, D.174, D.327 Ligands: ZN.2, NCD.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.82, A:H.84, A:D.174, A:D.327 ZN.2: 5 residues within 4Å: Chain A: D.174, H.201, H.254 Ligands: ZN.1, NCD.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.174, A:H.201, A:H.254 ZN.4: 6 residues within 4Å: Chain B: H.82, H.84, D.174, D.327 Ligands: ZN.5, NCD.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.82, B:H.84, B:D.174, B:D.327 ZN.5: 5 residues within 4Å: Chain B: D.174, H.201, H.254 Ligands: ZN.4, NCD.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.174, B:H.201, B:H.254

2 x NCD: N-CARBAMOYL-L-ASPARTATE(Non-covalent)

NCD.3: 13 residues within 4Å: Chain A: H.84, R.86, N.116, G.175, M.299, N.300, D.327, A.329, H.331, F.345, G.346 Ligands: ZN.1, ZN.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.116, A:N.300, A:N.300, A:D.327, A:F.345, A:F.345 Salt bridges: A:H.84, A:R.86, A:H.201, A:H.331 NCD.6: 14 residues within 4Å: Chain B: H.84, R.86, N.116, G.175, H.201, M.299, N.300, D.327, A.329, H.331, F.345, G.346 Ligands: ZN.4, ZN.5 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:N.116, B:G.175, B:N.300, B:N.300, B:D.327, B:F.345, B:F.345 Water bridges: B:D.327, B:I.347 Salt bridges: B:H.84, B:R.86, B:H.201, B:H.331

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rice, A.J. et al., Ca-asp bound X-ray structure and inhibition of Bacillus anthracis dihydroorotase (DHOase). Bioorg.Med.Chem. (2016)

Release Date

2016-08-10

Peptides

Dihydroorotase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dihydroorotase