SMTL ID : 4yk4.1 (1 other biounit)

Human antibody 641 I-9 in complex with influenza hemagglutinin H1 Solomon Islands/03/2006

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain C: N.15, K.43, E.47 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.15, C:K.43, C:E.47 NAG.2: 8 residues within 4Å: Chain C: E.27, E.47, N.48, C.51, S.95, C.96, S.97, R.181 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.97, C:R.181 NAG.3: 4 residues within 4Å: Chain C: S.83, P.85, N.86, K.123 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.123 Water bridges: C:N.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmidt, A.G. et al., Viral receptor-binding site antibodies with diverse germline origins. Cell (2015)

Release Date

2015-05-27

Peptides

641 I-9 VLCL antibody: A
641 I-9 VHCH antibody: B
Hemagglutinin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Y

B
Z

C
E

641 I-9 VLCL antibody

641 I-9 VHCH antibody

Hemagglutinin

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