SMTL ID : 4yoa.1

Crsystal structure HIV-1 Protease MDR769 L33F Complexed with darunavir

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.1: 16 residues within 4Å: Chain A: N.25, G.27, A.28, D.29, T.80, P.81, T.82, V.84 Chain B: R.8, N.25, G.27, A.28, D.29, D.30, V.32 Ligands: 017.2 13 PLIP interactions: 7 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:R.8, B:N.25, B:N.25, B:G.27, B:D.29, B:D.30, B:D.30, A:N.25, A:D.29 Hydrophobic interactions: A:T.82, A:V.84 Water bridges: A:D.29, A:D.29 017.2: 16 residues within 4Å: Chain A: R.8, N.25, G.27, A.28, D.29, D.30, V.32 Chain B: N.25, G.27, A.28, D.29, T.80, P.81, T.82, V.84 Ligands: 017.1 11 PLIP interactions: 5 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:T.82, B:V.84 Hydrogen bonds: B:N.25, B:D.29, A:R.8, A:N.25, A:N.25, A:G.27, A:D.29, A:D.30 Water bridges: B:D.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuiper, B.D. et al., The L33F darunavir resistance mutation acts as a molecular anchor reducing the flexibility of the HIV-1 protease 30s and 80s loops. Biochem Biophys Rep (2015)

Release Date

2015-07-08

Peptides

HIV-1 Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

HIV-1 Protease

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