- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 4 residues within 4Å:- Chain A: A.265, T.266, S.267, R.287
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.267
- Salt bridges: A:R.287
SO4.8: 3 residues within 4Å:- Chain B: R.217
- Chain D: R.217
- Ligands: SO4.17
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain D- Salt bridges: B:R.217, D:R.217
SO4.9: 4 residues within 4Å:- Chain B: A.265, T.266, S.267, R.287
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.265, B:S.267
- Salt bridges: B:R.287
SO4.11: 4 residues within 4Å:- Chain C: A.265, T.266, S.267, R.287
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.267
- Salt bridges: C:R.287
SO4.17: 3 residues within 4Å:- Chain B: R.217
- Chain D: R.217
- Ligands: SO4.8
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain B- Salt bridges: D:R.217, B:R.217
SO4.18: 4 residues within 4Å:- Chain D: A.265, T.266, S.267, R.287
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:A.265, D:S.267
- Salt bridges: D:R.287
- 4 x GLY: GLYCINE(Covalent)(Non-covalent)
GLY.3: 7 residues within 4Å:- Chain B: F.246, G.250, C.251, Y.252, A.265, R.335
- Ligands: GLY.4
6 PLIP interactions:1 Ligand-Ligand interactions, 5 interactions with chain B- Hydrogen bonds: G.4, B:A.265, B:A.265, B:R.335, B:R.335
- Salt bridges: B:R.335
GLY.4: 7 residues within 4Å:- Chain B: M.49, E.55, Y.252, R.308, R.335
- Ligands: GLY.3, FAD.5
4 PLIP interactions:1 Ligand-Ligand interactions, 3 interactions with chain B- Hydrogen bonds: G.3, B:R.335
- Salt bridges: B:R.308, B:R.335
GLY.12: 7 residues within 4Å:- Chain D: F.246, G.250, C.251, Y.252, A.265, R.335
- Ligands: GLY.13
6 PLIP interactions:1 Ligand-Ligand interactions, 5 interactions with chain D- Hydrogen bonds: G.13, D:A.265, D:A.265, D:R.335, D:R.335
- Salt bridges: D:R.335
GLY.13: 7 residues within 4Å:- Chain D: M.49, E.55, Y.252, R.308, R.335
- Ligands: GLY.12, FAD.14
6 PLIP interactions:1 Ligand-Ligand interactions, 5 interactions with chain D- Hydrogen bonds: G.12, D:E.55, D:Y.252, D:R.335
- Salt bridges: D:R.308, D:R.335
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
IPA.7: 6 residues within 4Å:- Chain B: A.18, F.21, E.22, K.25, L.76, P.342
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:A.18
- Hydrogen bonds: B:K.25
IPA.16: 6 residues within 4Å:- Chain D: A.18, F.21, E.22, K.25, L.76, P.342
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:A.18
- Hydrogen bonds: D:E.22, D:K.25
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shiono, T. et al., Crystal structure of glycine oxidase from Geobacillus kaustophilus. to be published
- Release Date
- 2016-03-23
- Peptides
- Glycine oxidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GLY: GLYCINE(Covalent)(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shiono, T. et al., Crystal structure of glycine oxidase from Geobacillus kaustophilus. to be published
- Release Date
- 2016-03-23
- Peptides
- Glycine oxidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B