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SMTL ID : 4yuu.2 (3 other biounits)

Crystal structure of oxygen-evolving photosystem II from a red alga

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.77 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
9 x BCR: BETA-CAROTENE(Non-covalent)
1 x CL: CHLORIDE ION(Non-functional Binders)
35 x CLA: CHLOROPHYLL A(Non-covalent)
4 x GOL: GLYCEROL(Non-functional Binders)
5 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
1 x OEX: CA-MN4-O5 CLUSTER(Non-covalent)
15 x UNL: UNKNOWN LIGAND(Non-functional Binders)
1 x FE: FE (III) ION(Non-covalent)
2 x PHO: PHEOPHYTIN A(Non-covalent)
7 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
1 x BCT: BICARBONATE ION(Non-functional Binders)
4 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
3 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
1 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Ago, H. et al., Novel Features of Eukaryotic Photosystem II Revealed by Its Crystal Structure Analysis from a Red Alga. J.Biol.Chem. (2016)
Release Date
2016-01-20
Peptides
Photosystem II protein D1: A
Photosystem II CP47 reaction center protein: B
Photosystem II CP43 reaction center protein: C
Photosystem II D2 protein: D
Cytochrome b559 subunit alpha: E
Cytochrome b559 subunit beta: F
Photosystem II reaction center protein H: G
Photosystem II reaction center protein I: H
Photosystem II reaction center protein J: I
Photosystem II reaction center protein K: J
Photosystem II reaction center protein L: K
PHOTOSYSTEM II REACTION CENTER PROTEIN M: L
PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO: M
Photosystem II reaction center protein T: N
Photosystem II 12 kDa extrinsic protein, chloroplastic: O
Cytochrome c-550: P
Photosystem II reaction center protein Ycf12: Q
PHOTOSYSTEM II REACTION CENTER PROTEIN X: R
PEPTIDE CHAIN UNASSIGNED: S
PEPTIDE CHAIN UNASSIGNED: T
Extrinsic protein in photosystem II: U
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
a1
B
b1
C
c1
D
d1
E
e1
F
f1
G
h1
H
i1
I
j1
J
k1
K
l1
L
m1
M
o1
N
t1
O
u1
P
v1
Q
y1
R
x1
S
s1
T
w1
U
q1
Membrane
We predict this structure to be a membrane protein.

Photosystem II protein D1

Photosystem II CP47 reaction center protein

Photosystem II CP43 reaction center protein

Photosystem II D2 protein

Cytochrome b559 subunit alpha

Cytochrome b559 subunit beta

Photosystem II reaction center protein H

Photosystem II reaction center protein I

Photosystem II reaction center protein J

Photosystem II reaction center protein K

Photosystem II reaction center protein L

PHOTOSYSTEM II REACTION CENTER PROTEIN M

PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO

Photosystem II reaction center protein T

Photosystem II 12 kDa extrinsic protein, chloroplastic

Cytochrome c-550

Photosystem II reaction center protein Ycf12

PHOTOSYSTEM II REACTION CENTER PROTEIN X

PEPTIDE CHAIN UNASSIGNED

PEPTIDE CHAIN UNASSIGNED

Extrinsic protein in photosystem II

Related Entries With Identical Sequence

4yuu.1 | 4yuu.3 | 4yuu.4