SMTL ID : 4yvn.1

Crystal structure of CotA laccase complexed with ABTS at a novel binding site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.419, C.492, H.497, M.502 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.419, A:C.492, A:H.497 CU.2: 5 residues within 4Å: Chain A: H.105, H.155, H.422, H.424, H.491 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.155, A:H.424, A:H.491, H2O.12 CU.3: 5 residues within 4Å: Chain A: H.105, H.107, W.151, H.153, H.493 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.107, A:H.153, A:H.493, H2O.12

1 x EBS: 3-ETHYL-2-[(2Z)-2-(3-ETHYL-6-SULFO-1,3-BENZOTHIAZOL-2(3H)-YLIDENE)HYDRAZINO]-6-SULFO-3H-1,3-BENZOTHIAZOL-1-IUM(Non-covalent)

EBS.4: 12 residues within 4Å: Chain A: P.359, S.360, H.363, T.406, I.408, R.429, L.431, W.463, R.476, A.478, A.479, T.480 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.359, A:T.406, A:L.431, A:A.478 Hydrogen bonds: A:S.360, A:R.429 Salt bridges: A:R.476 pi-Stacking: A:H.363, A:W.463

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: I.12, E.188, Y.189, E.244, Y.250, K.341 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain A: F.292, S.293, Y.300, P.457, S.459 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.293, A:S.293, A:Y.300 Water bridges: A:E.460 EDO.7: 5 residues within 4Å: Chain A: S.266, L.267, D.268, A.317 Ligands: EDO.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.267 EDO.8: 6 residues within 4Å: Chain A: D.268, A.317, P.328, A.332, N.333 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.268, A:N.333 EDO.9: 4 residues within 4Å: Chain A: P.483, Y.484, S.485, D.510 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.485, A:D.510, A:D.510

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 7 residues within 4Å: Chain A: D.113, D.114, Y.118, A.121, Y.133, K.135, R.487 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.135, A:K.135 Water bridges: A:D.113, A:D.114, A:D.116, A:K.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z. et al., Crystal structure of CotA laccase complexed with 2,2-azinobis-(3-ethylbenzothiazoline-6-sulfonate) at a novel binding site. Acta Crystallogr.,Sect.F (2016)

Release Date

2016-03-30

Peptides

Spore coat protein A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Spore coat protein A

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