SMTL ID : 4yxj.1

Structure of Thermotoga maritima DisA in complex with ApCpp

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-octamer

Ligands

8 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

APC.1: 16 residues within 4Å: Chain A: L.59, D.95, G.96, V.112, H.113, L.114, G.126, T.127, R.128, T.131, S.147, R.148, R.149, R.150 Chain B: T.127 Ligands: APC.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:D.95, A:D.95, A:G.96, A:L.114, A:L.114, A:G.126, A:R.128, A:R.128, A:T.131, A:R.148, A:R.148, A:R.148, A:R.148, A:R.149 Water bridges: A:T.127, A:H.129 Salt bridges: A:R.148, A:R.149 APC.2: 17 residues within 4Å: Chain A: T.127 Chain B: L.59, D.95, G.96, A.97, V.112, H.113, L.114, G.126, T.127, R.128, T.131, S.147, R.148, R.149, R.150 Ligands: APC.1 18 PLIP interactions: 14 interactions with chain B, 3 interactions with chain F, 1 interactions with chain A Hydrogen bonds: B:D.95, B:G.96, B:L.114, B:L.114, B:T.127, B:R.128, B:R.128, B:S.147, B:R.148, B:R.148, B:R.148, B:R.149, A:D.95 Water bridges: B:R.128, F:Y.89, F:K.93, F:K.93 Salt bridges: B:R.150 APC.3: 16 residues within 4Å: Chain C: L.59, D.95, G.96, V.112, H.113, L.114, G.126, T.127, R.128, T.131, S.147, R.148, R.149, R.150 Chain D: T.127 Ligands: APC.4 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:D.95, C:D.95, C:G.96, C:L.114, C:L.114, C:G.126, C:R.128, C:R.128, C:T.131, C:R.148, C:R.148, C:R.148, C:R.148, C:R.149 Water bridges: C:T.127, C:H.129 Salt bridges: C:R.148, C:R.149 APC.4: 17 residues within 4Å: Chain C: T.127 Chain D: L.59, D.95, G.96, A.97, V.112, H.113, L.114, G.126, T.127, R.128, T.131, S.147, R.148, R.149, R.150 Ligands: APC.3 18 PLIP interactions: 14 interactions with chain D, 1 interactions with chain C, 3 interactions with chain H Hydrogen bonds: D:D.95, D:G.96, D:L.114, D:L.114, D:T.127, D:R.128, D:R.128, D:S.147, D:R.148, D:R.148, D:R.148, D:R.149, C:D.95 Water bridges: D:R.128, H:Y.89, H:K.93, H:K.93 Salt bridges: D:R.150 APC.5: 16 residues within 4Å: Chain E: L.59, D.95, G.96, V.112, H.113, L.114, G.126, T.127, R.128, T.131, S.147, R.148, R.149, R.150 Chain F: T.127 Ligands: APC.6 18 PLIP interactions: 18 interactions with chain E Hydrogen bonds: E:D.95, E:D.95, E:G.96, E:L.114, E:L.114, E:G.126, E:R.128, E:R.128, E:T.131, E:R.148, E:R.148, E:R.148, E:R.148, E:R.149 Water bridges: E:T.127, E:H.129 Salt bridges: E:R.148, E:R.149 APC.6: 17 residues within 4Å: Chain E: T.127 Chain F: L.59, D.95, G.96, A.97, V.112, H.113, L.114, G.126, T.127, R.128, T.131, S.147, R.148, R.149, R.150 Ligands: APC.5 18 PLIP interactions: 14 interactions with chain F, 1 interactions with chain E, 3 interactions with chain D Hydrogen bonds: F:D.95, F:G.96, F:L.114, F:L.114, F:T.127, F:R.128, F:R.128, F:S.147, F:R.148, F:R.148, F:R.148, F:R.149, E:D.95 Water bridges: F:R.128, D:Y.89, D:K.93, D:K.93 Salt bridges: F:R.150 APC.7: 16 residues within 4Å: Chain G: L.59, D.95, G.96, V.112, H.113, L.114, G.126, T.127, R.128, T.131, S.147, R.148, R.149, R.150 Chain H: T.127 Ligands: APC.8 18 PLIP interactions: 18 interactions with chain G Hydrogen bonds: G:D.95, G:D.95, G:G.96, G:L.114, G:L.114, G:G.126, G:R.128, G:R.128, G:T.131, G:R.148, G:R.148, G:R.148, G:R.148, G:R.149 Water bridges: G:T.127, G:H.129 Salt bridges: G:R.148, G:R.149 APC.8: 17 residues within 4Å: Chain G: T.127 Chain H: L.59, D.95, G.96, A.97, V.112, H.113, L.114, G.126, T.127, R.128, T.131, S.147, R.148, R.149, R.150 Ligands: APC.7 18 PLIP interactions: 14 interactions with chain H, 1 interactions with chain G, 3 interactions with chain B Hydrogen bonds: H:D.95, H:G.96, H:L.114, H:L.114, H:T.127, H:R.128, H:R.128, H:S.147, H:R.148, H:R.148, H:R.148, H:R.149, G:D.95 Water bridges: H:R.128, B:Y.89, B:K.93, B:K.93 Salt bridges: H:R.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muller, M. et al., Structural analysis of the diadenylate cyclase reaction of DNA-integrity scanning protein A (DisA) and its inhibition by 3'-dATP. Biochem.J. (2015)

Release Date

2015-06-03

Peptides

DNA integrity scanning protein DisA: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

DNA integrity scanning protein DisA

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