SMTL ID : 4yy1.1 (1 other biounit)

The structure of hemagglutinin from a H6N1 influenza virus (A/chicken/Taiwan/A2837/2013) in complex with human receptor analog 6'SLNLN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.167, T.169, T.240 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 3 residues within 4Å: Chain C: N.167, T.169, T.240 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 3 residues within 4Å: Chain E: N.167, T.169, T.240 No protein-ligand interaction detected (PLIP)

3 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose(Non-covalent)

GAL-SIA.2: 10 residues within 4Å: Chain A: Y.91, R.129, V.131, T.132, N.133, H.181, L.192, G.223, Q.224, S.226 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.133, A:Q.224, A:V.131, A:N.133, A:H.181, A:Q.224, A:S.226 Hydrophobic interactions: A:R.129 GAL-SIA.6: 10 residues within 4Å: Chain C: Y.91, R.129, V.131, T.132, N.133, H.181, L.192, G.223, Q.224, S.226 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.133, C:Q.224, C:V.131, C:N.133, C:H.181, C:Q.224, C:S.226 Hydrophobic interactions: C:R.129 GAL-SIA.10: 10 residues within 4Å: Chain E: Y.91, R.129, V.131, T.132, N.133, H.181, L.192, G.223, Q.224, S.226 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:N.133, E:Q.224, E:V.131, E:N.133, E:H.181, E:Q.224, E:S.226 Hydrophobic interactions: E:R.129

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: Q.15, N.23 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.23 NAG.4: 4 residues within 4Å: Chain B: E.147, E.150, N.154, T.156 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:T.156 Hydrogen bonds: B:E.147, B:E.150, B:T.156 NAG.7: 2 residues within 4Å: Chain C: Q.15, N.23 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.23 NAG.8: 4 residues within 4Å: Chain D: E.147, E.150, N.154, T.156 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:T.156 Hydrogen bonds: D:E.147, D:E.150, D:T.156 NAG.11: 2 residues within 4Å: Chain E: Q.15, N.23 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.23 NAG.12: 4 residues within 4Å: Chain F: E.147, E.150, N.154, T.156 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:T.156 Hydrogen bonds: F:E.147, F:E.150, F:T.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structure of hemagglutinin from a H6N1 influenza virus (A/chicken/Taiwan/A2837/2013). To Be Published

Release Date

2016-03-23

Peptides

HA1: ACE
HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

HA1

HA2

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