SMTL ID : 4yy7.2 (1 other biounit)

The structure of hemagglutinin from a H6N1 influenza virus (A/chicken/Taiwan/A2837/2013) in complex with avian receptor analog 3'SLNLN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.167, E.205, T.240 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 3 residues within 4Å: Chain C: N.167, E.205, T.240 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 3 residues within 4Å: Chain E: N.167, E.205, T.240 No protein-ligand interaction detected (PLIP)

3 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-SIA.2: 12 residues within 4Å: Chain A: Y.91, R.129, V.131, T.132, N.133, W.150, V.152, H.181, V.188, G.223, Q.224, S.226 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.133, A:Q.224, A:Y.91, A:V.131, A:T.132, A:N.133, A:H.181, A:Q.224, A:Q.224, A:Q.224, A:S.226 Hydrophobic interactions: A:V.152 NAG-GAL-SIA.6: 12 residues within 4Å: Chain C: Y.91, R.129, V.131, T.132, N.133, W.150, V.152, H.181, V.188, G.223, Q.224, S.226 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:N.133, C:Q.224, C:Y.91, C:V.131, C:T.132, C:N.133, C:H.181, C:Q.224, C:Q.224, C:Q.224, C:S.226 Hydrophobic interactions: C:V.152 NAG-GAL-SIA.10: 12 residues within 4Å: Chain E: Y.91, R.129, V.131, T.132, N.133, W.150, V.152, H.181, V.188, G.223, Q.224, S.226 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:N.133, E:Q.224, E:Y.91, E:V.131, E:T.132, E:N.133, E:H.181, E:Q.224, E:Q.224, E:Q.224, E:S.226 Hydrophobic interactions: E:V.152

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: K.22, N.23 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.22 Hydrogen bonds: A:N.23 NAG.4: 3 residues within 4Å: Chain B: E.150, N.154, T.156 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:T.156 Hydrogen bonds: B:T.156 NAG.7: 2 residues within 4Å: Chain C: K.22, N.23 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:K.22 Hydrogen bonds: C:N.23 NAG.8: 3 residues within 4Å: Chain D: E.150, N.154, T.156 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:T.156 Hydrogen bonds: D:T.156 NAG.11: 2 residues within 4Å: Chain E: K.22, N.23 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:K.22 Hydrogen bonds: E:N.23 NAG.12: 3 residues within 4Å: Chain F: E.150, N.154, T.156 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:T.156 Hydrogen bonds: F:T.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structure of hemagglutinin from a H6N1 influenza virus (A/chicken/Taiwan/A2837/2013). To Be Published

Release Date

2016-03-23

Peptides

HA1: ACE
HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
C

E
C

B
D

D
D

F
D

HA1

HA2

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