SMTL ID : 4yy9.1

The structure of hemagglutinin from a H6N1 influenza virus (A/Taiwan/2/2013)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain B: E.147, E.150, S.151, N.154, T.156 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.147, B:E.147 NAG-NAG-BMA.4: 5 residues within 4Å: Chain D: E.147, E.150, S.151, N.154, T.156 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.147, D:E.147 NAG-NAG-BMA.7: 5 residues within 4Å: Chain F: E.147, E.150, S.151, N.154, T.156 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:E.147, F:E.147

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: Q.15, N.23 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.15 NAG.3: 3 residues within 4Å: Chain A: N.167, T.169, T.240 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.169 Hydrogen bonds: A:N.167 NAG.5: 2 residues within 4Å: Chain C: Q.15, N.23 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.15 NAG.6: 3 residues within 4Å: Chain C: N.167, T.169, T.240 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:T.169 Hydrogen bonds: C:N.167 NAG.8: 2 residues within 4Å: Chain E: Q.15, N.23 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:Q.15 NAG.9: 3 residues within 4Å: Chain E: N.167, T.169, T.240 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:T.169 Hydrogen bonds: E:N.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structure of hemagglutinin from a H6N1 influenza virus (A/Taiwan/2/2013) at 2.6 Angstroms resolution. To Be Published

Release Date

2016-04-13

Peptides

HA1: ACE
HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

HA1

HA2

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