SMTL ID : 4yya.1

The structure of hemagglutinin from a H6N1 influenza virus (A/Taiwan/2/2013) in complex with avian receptor analog 3'SLNLN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-3-3-mer

Ligands

3 x GAL- NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose

GAL-NAG-GAL-SIA.1: 15 residues within 4Å: Chain A: Y.91, R.129, G.130, V.131, T.132, N.133, W.150, H.181, L.184, D.185, V.188, L.192, G.223, Q.224, S.226 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.133, A:Q.224, A:D.185, A:V.131, A:N.133, A:Q.224, A:S.226, A:S.226 Hydrophobic interactions: A:W.150 Water bridges: A:S.226 GAL-NAG-GAL-SIA.5: 15 residues within 4Å: Chain C: Y.91, R.129, G.130, V.131, T.132, N.133, W.150, H.181, L.184, D.185, V.188, L.192, G.223, Q.224, S.226 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:N.133, C:Q.224, C:D.185, C:V.131, C:N.133, C:Q.224, C:S.226, C:S.226 Hydrophobic interactions: C:W.150 Water bridges: C:S.226 GAL-NAG-GAL-SIA.9: 15 residues within 4Å: Chain E: Y.91, R.129, G.130, V.131, T.132, N.133, W.150, H.181, L.184, D.185, V.188, L.192, G.223, Q.224, S.226 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:N.133, E:Q.224, E:D.185, E:V.131, E:N.133, E:Q.224, E:S.226, E:S.226 Hydrophobic interactions: E:W.150 Water bridges: E:S.226

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 5 residues within 4Å: Chain B: E.147, E.150, S.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.6: 5 residues within 4Å: Chain D: E.147, E.150, S.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.10: 5 residues within 4Å: Chain F: E.147, E.150, S.151, N.154, T.156 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: Q.15, N.23 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.23 NAG.4: 2 residues within 4Å: Chain A: N.167, T.240 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Chain C: Q.15, N.23 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:N.23 NAG.8: 2 residues within 4Å: Chain C: N.167, T.240 No protein-ligand interaction detected (PLIP) NAG.11: 2 residues within 4Å: Chain E: Q.15, N.23 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:N.23 NAG.12: 2 residues within 4Å: Chain E: N.167, T.240 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structure of hemagglutinin from a H6N1 influenza virus (A/chicken/Taiwan/A2837/2013). To Be Published

Release Date

2016-04-13

Peptides

HA1: ACE
HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

HA1

HA2

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