SMTL ID : 4yyf.2 (2 other biounits)

The crystal structure of a glycosyl hydrolase of GH3 family member from [Mycobacterium smegmatis str. MC2 155

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: L.257, T.258, D.261, S.266, P.267, A.268 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.261, A:S.266, A:A.268

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 9 residues within 4Å: Chain A: R.173, H.204, H.208, S.215, H.216, D.290, M.295 Ligands: ACT.3, ACT.4 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.173, A:R.173 Salt bridges: A:R.173, A:H.204, A:H.216 ACT.3: 7 residues within 4Å: Chain A: M.72, D.104, F.155, M.248, D.290 Ligands: ACT.2, ACT.4 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.203 ACT.4: 6 residues within 4Å: Chain A: D.104, R.112, R.173, H.216 Ligands: ACT.2, ACT.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.112 Water bridges: A:R.173 Salt bridges: A:R.173, A:H.216

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 1 residues within 4Å: Chain A: S.260 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.260 NA.6: 2 residues within 4Å: Chain A: A.347, S.351 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.351, A:S.351

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a glycosyl hydrolase of GH3 family member from [Mycobacterium smegmatis str. MC2 155. To Be Published

Release Date

2015-04-08

Peptides

Beta-N-acetylhexosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-N-acetylhexosaminidase

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