SMTL ID : 4yz3.1 (1 other biounit)

Crystal Structure of Streptococcus pneumoniae NanC, in complex with Oseltamivir.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

monomer

Ligands

1 x G39: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid(Non-covalent)

G39.1: 14 residues within 4Å: Chain A: R.227, I.228, R.246, D.252, I.308, D.309, D.325, Y.490, S.519, E.521, R.537, R.599, Y.632, W.653 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.490 Hydrogen bonds: A:R.246, A:D.252, A:D.252, A:Y.490, A:Y.490, A:Y.632 Water bridges: A:D.309 Salt bridges: A:R.227, A:R.537, A:R.599

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: V.294, R.297, N.656 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.656 Salt bridges: A:R.297 SO4.3: 3 residues within 4Å: Chain A: Y.118, K.119, H.212 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.118, A:Y.118 Salt bridges: A:K.119, A:H.212 SO4.4: 3 residues within 4Å: Chain A: S.595, H.601, S.626 4 PLIP interactions: 4 interactions with chain A Water bridges: A:S.595, A:T.596, A:T.596 Salt bridges: A:H.601 SO4.5: 5 residues within 4Å: Chain A: D.359, T.360, D.361, N.363, R.376 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.360, A:D.361, A:N.363, A:N.363, A:R.376 Water bridges: A:D.361 SO4.6: 4 residues within 4Å: Chain A: T.178, A.179, F.180, G.181 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.180, A:G.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Owen, D.C. et al., Crystal Structure of Streptococcus pneumoniae NanC. To Be Published

Release Date

2016-04-20

Peptides

Neuraminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neuraminidase

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