SMTL ID : 4yzl.1

Crystal structure of the indole prenyltransferase TleC complexed with indolactam V and DMSPP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ILV: (2S,5S)-5-(hydroxymethyl)-1-methyl-2-(propan-2-yl)-1,2,4,5,6,8-hexahydro-3H-[1,4]diazonino[7,6,5-cd]indol-3-one(Non-covalent)

ILV.1: 15 residues within 4Å: Chain A: V.25, E.28, W.97, V.98, E.106, A.235, A.236, Y.252, K.297, V.300, Y.317, N.367, F.368, Y.382 Ligands: DST.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.97, A:A.235, A:A.236, A:Y.252, A:Y.317, A:F.368 Hydrogen bonds: A:E.28, A:E.28, A:E.106, A:N.367 pi-Stacking: A:Y.382

1 x DST: DIMETHYLALLYL S-THIOLODIPHOSPHATE(Non-covalent)

DST.2: 11 residues within 4Å: Chain A: E.106, R.119, S.121, K.187, F.189, R.248, Q.250, Y.252, Y.317, Y.382 Ligands: ILV.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.189, A:F.189 Hydrogen bonds: A:R.119, A:R.119, A:K.187, A:Q.250, A:Y.252, A:Y.317 Water bridges: A:R.248, A:T.315 Salt bridges: A:R.119, A:K.187, A:R.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mori, T. et al., Manipulation of prenylation reactions by structure-based engineering of bacterial indolactam prenyltransferases. Nat Commun (2016)

Release Date

2016-03-16

Peptides

Tryptophan dimethylallyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tryptophan dimethylallyltransferase

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