SMTL ID : 4z04.1

Crystal structure of a probable lactoylglutathione lyase from Brucella melitensis in complex with glutathione

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 13 residues within 4Å: Chain A: H.71, N.97, G.98, R.103, Y.106, Y.110, F.114, N.122, E.124 Chain B: H.12, W.45 Ligands: ZN.2, MRD.7 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.114, A:F.114 Hydrogen bonds: A:N.97, A:Y.106, A:Y.106, A:N.122 Water bridges: A:Y.106, A:Y.106 Salt bridges: A:R.103 GSH.5: 13 residues within 4Å: Chain A: H.12, W.45 Chain B: H.71, N.97, G.98, R.103, Y.106, Y.110, F.114, N.122, E.124 Ligands: MRD.3, ZN.6 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.114, B:F.114 Hydrogen bonds: B:N.97, B:Y.106, B:N.122 Water bridges: B:Y.106, B:Y.106, B:Y.106 Salt bridges: B:R.103

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.71, Y.110, E.124 Chain B: H.12 Ligands: GSH.1 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.71, A:E.124, B:H.12 ZN.6: 5 residues within 4Å: Chain A: H.12 Chain B: H.71, Y.110, E.124 Ligands: GSH.5 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Metal complexes: B:H.71, B:E.124, A:H.12

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.3: 8 residues within 4Å: Chain A: G.14, F.15, N.16, W.45, W.57, G.59 Chain B: H.71 Ligands: GSH.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.45, A:W.45, A:W.57 Water bridges: A:N.16 MRD.7: 8 residues within 4Å: Chain A: H.71 Chain B: G.14, F.15, N.16, W.45, W.57, G.59 Ligands: GSH.1 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.45, B:W.45, B:W.57 Water bridges: B:N.16

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 4 residues within 4Å: Chain A: V.69, N.97, L.116, N.122 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.69 Hydrogen bonds: A:N.97, A:N.122 Water bridges: A:G.120 MPD.8: 4 residues within 4Å: Chain B: V.69, N.97, L.116, N.122 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.69 Hydrogen bonds: B:N.97, B:N.122 Water bridges: B:G.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal structure of a probable lactoylglutathione lyase from Brucella melitensis in complex with glutathione. to be published

Release Date

2015-04-22

Peptides

Glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein