SMTL ID : 4z05.2 (1 other biounit)

C. bescii Family 3 pectate lyase mutant E84A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.75, D.96 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.75, A:D.96, H2O.1, H2O.1, H2O.4 CA.2: 3 residues within 4Å: Chain A: D.92, V.93, E.115 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.92, A:V.93, A:E.115, H2O.4, H2O.7

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 5 residues within 4Å: Chain A: T.128, K.130, Y.156, E.158, Y.204 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.128, A:Y.204

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.4: 4 residues within 4Å: Chain A: L.17, I.19, I.23, Y.31 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.17 Hydrogen bonds: A:Y.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alahuhta, M. et al., The catalytic mechanism and unique low pH optimum of Caldicellulosiruptor bescii family 3 pectate lyase. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-12-23

Peptides

Pectate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Pectate lyase

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