SMTL ID : 4z10.2 (2 other biounits)

Inactive aurone synthase (polyphenol oxidase) co-crystallized with 1,4-resorcinol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

hetero-2-2-mer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 8 residues within 4Å: Chain A: H.93, C.97, I.115, H.116, H.125, H.252, F.282, H.286 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.93, A:H.116, A:H.125 CU.7: 8 residues within 4Å: Chain C: H.93, C.97, I.115, H.116, H.125, H.252, F.282, H.286 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.93, C:H.116, C:H.125

4 x RCO: RESORCINOL(Non-covalent)

RCO.2: 11 residues within 4Å: Chain A: P.155, Q.201, V.204, A.205, L.208 Chain B: F.4 Chain C: A.205, L.208, S.209, Y.212 Chain D: P.7 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: A:V.204, A:L.208, D:P.7 Hydrogen bonds: C:S.209 RCO.3: 6 residues within 4Å: Chain A: D.221, P.222, P.302, G.303, V.305 Ligands: GOL.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.221 Water bridges: A:G.303 RCO.8: 8 residues within 4Å: Chain A: V.211, Y.212, L.215, V.216, L.299 Chain C: Y.212, V.216, L.301 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:V.216, A:L.215 Hydrogen bonds: C:Y.212, C:Y.212 Water bridges: A:Y.212 RCO.9: 7 residues within 4Å: Chain C: A.73, R.76, A.77, A.168, S.169, N.170, P.171 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:P.171 Hydrogen bonds: C:S.169

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: P.222, V.305, D.306, I.307, T.308, D.309 Ligands: RCO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.308, A:D.309 GOL.5: 10 residues within 4Å: Chain A: D.42, F.43, Q.44, P.46, Y.130, F.131, R.134, D.321, E.322, V.327 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.42, A:Q.44, A:D.321 Water bridges: A:R.134, A:R.134, A:R.134 GOL.6: 6 residues within 4Å: Chain A: D.42, F.43, F.45, Y.330, K.332, D.333 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.43, A:F.43, A:K.332 GOL.10: 11 residues within 4Å: Chain C: R.27, R.76, F.86, Y.173, D.174, Q.175, Y.176, D.269, Y.278, D.279, P.280 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:R.27, C:R.27, C:R.76, C:R.76, C:Q.175, C:Q.175, C:Y.278

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Molitor, C. et al., Inactive aurone synthase (polyphenol oxidase) co-crystallized with 1,4-resorcinol. To Be Published

Release Date

2016-04-06

Peptides

Aurone synthase: AC
Aurone synthase: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
D

B
H

D
J

Aurone synthase

Aurone synthase

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