- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x M6A: (1R,2R,3R,6R,7S,8S,9R,10R,12R,13S,17S)-3-ethyl-2,10-dihydroxy-2,6,8,10,12,15,15,17-octamethyl-5-oxo-9-(prop-2-yn-1-yloxy)-4,14,16-trioxabicyclo[11.3.1]heptadec-7-yl {2-[N'-(methylcarbamoyl)carbamimidamido]ethyl}carbamate(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 8 residues within 4Å:- Chain A: F.16, I.17, P.18, T.19, S.54, F.55, Y.103
- Ligands: M6A.1
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.19, A:T.19, A:S.54, A:F.55, A:Y.103, A:Y.103
GOL.3: 6 residues within 4Å:- Chain A: P.264, F.267, S.268, R.443, Y.444, T.445
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.268, A:S.268, A:R.443, A:T.445
GOL.4: 5 residues within 4Å:- Chain A: R.248, F.263, P.264, S.265
- Chain B: W.256
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:W.256, A:R.248, A:S.265
GOL.5: 5 residues within 4Å:- Chain A: R.8, T.49, H.50, R.93
- Ligands: CL.8
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.8, A:S.91, A:R.93, A:Y.212
- Water bridges: A:H.50, A:H.50
GOL.6: 6 residues within 4Å:- Chain A: R.166, A.208, P.209, L.210, D.211, K.288
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.166, A:D.211, A:K.288
- Water bridges: A:Q.184
GOL.7: 7 residues within 4Å:- Chain A: Y.327, L.329, V.330, G.331, C.332, D.333, V.336
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.327, A:G.331, A:D.333, A:D.333
GOL.10: 8 residues within 4Å:- Chain B: F.16, I.17, P.18, T.19, S.54, F.55, Y.103
- Ligands: M6A.9
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.19, B:S.54, B:F.55, B:Y.103
GOL.11: 6 residues within 4Å:- Chain B: P.264, F.267, S.268, R.443, Y.444, T.445
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.268, B:S.268, B:R.443, B:T.445
GOL.12: 5 residues within 4Å:- Chain A: W.256
- Chain B: R.248, F.263, P.264, S.265
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.248, B:S.265, A:W.256
GOL.13: 5 residues within 4Å:- Chain B: R.8, T.49, H.50, R.93
- Ligands: CL.16
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.8, B:S.91, B:R.93, B:Y.212
- Water bridges: B:H.50
GOL.14: 6 residues within 4Å:- Chain B: R.166, A.208, P.209, L.210, D.211, K.288
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.166, B:D.211, B:K.288
- Water bridges: B:Q.184
GOL.15: 7 residues within 4Å:- Chain B: Y.327, L.329, V.330, G.331, C.332, D.333, V.336
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.327, B:G.331, B:D.333
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sugawara, A. et al., Creation of Customized Bioactivity within a 14-Membered Macrolide Scaffold: Design, Synthesis, and Biological Evaluation Using a Family-18 Chitinase. J.Med.Chem. (2015)
- Release Date
- 2015-07-01
- Peptides
- Chitinase B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x M6A: (1R,2R,3R,6R,7S,8S,9R,10R,12R,13S,17S)-3-ethyl-2,10-dihydroxy-2,6,8,10,12,15,15,17-octamethyl-5-oxo-9-(prop-2-yn-1-yloxy)-4,14,16-trioxabicyclo[11.3.1]heptadec-7-yl {2-[N'-(methylcarbamoyl)carbamimidamido]ethyl}carbamate(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sugawara, A. et al., Creation of Customized Bioactivity within a 14-Membered Macrolide Scaffold: Design, Synthesis, and Biological Evaluation Using a Family-18 Chitinase. J.Med.Chem. (2015)
- Release Date
- 2015-07-01
- Peptides
- Chitinase B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A