SMTL ID : 4z2s.1 (1 other biounit)

The crystal structure of Sclerotium Rolfsii lectin variant 2 (SSR2) in complex with N-acetyl-glucosamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 1 residues within 4Å: Chain A: Y.73 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.3, A:Y.73, A:Y.73

1 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG.2: 11 residues within 4Å: Chain A: D.78, I.79, V.80, T.81, N.82, N.101, R.102, Y.113, V.115, K.116 Ligands: NAG.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.115 Hydrogen bonds: A:D.78, A:T.81, A:N.101, A:R.102, A:Y.113 Water bridges: A:R.102 Salt bridges: A:R.102

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.3: 11 residues within 4Å: Chain A: D.78, I.79, V.80, T.81, N.82, N.101, R.102, Y.113, V.115, K.116 Ligands: NDG.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.115 Hydrogen bonds: A:T.81, A:Y.96, A:N.101, A:R.102, A:Y.113 Water bridges: A:R.102, A:R.102, A:Y.113 Salt bridges: A:R.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peppa, V.I. et al., Molecular Cloning, Carbohydrate Specificity and the Crystal Structure of Two Sclerotium rolfsii Lectin Variants. Molecules (2015)

Release Date

2015-07-01

Peptides

Sclerotium Rolfsii lectin variant: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sclerotium Rolfsii lectin variant

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