SMTL ID : 4z42.1

Crystal structure of urease from Yersinia enterocolitica

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

hetero-12-12-12-mer

Ligands

24 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 9 residues within 4Å: Chain C: H.139, H.141, G.172, H.224, H.251, H.277, H.325, D.365 Ligands: NI.2 Ligand excluded by PLIP NI.2: 5 residues within 4Å: Chain C: H.139, H.141, H.251, D.365 Ligands: NI.1 Ligand excluded by PLIP NI.3: 8 residues within 4Å: Chain F: H.139, H.141, H.224, H.251, H.277, H.325, D.365 Ligands: NI.4 Ligand excluded by PLIP NI.4: 5 residues within 4Å: Chain F: H.139, H.141, H.251, D.365 Ligands: NI.3 Ligand excluded by PLIP NI.5: 9 residues within 4Å: Chain I: H.139, H.141, G.172, H.224, H.251, H.277, H.325, D.365 Ligands: NI.6 Ligand excluded by PLIP NI.6: 5 residues within 4Å: Chain I: H.139, H.141, H.251, D.365 Ligands: NI.5 Ligand excluded by PLIP NI.7: 6 residues within 4Å: Chain L: H.139, H.224, H.251, H.277, D.365 Ligands: NI.8 Ligand excluded by PLIP NI.8: 5 residues within 4Å: Chain L: H.139, H.141, H.251, D.365 Ligands: NI.7 Ligand excluded by PLIP NI.9: 9 residues within 4Å: Chain O: H.139, H.141, G.172, H.224, H.251, H.277, H.325, D.365 Ligands: NI.10 Ligand excluded by PLIP NI.10: 5 residues within 4Å: Chain O: H.139, H.141, H.251, D.365 Ligands: NI.9 Ligand excluded by PLIP NI.11: 8 residues within 4Å: Chain R: H.139, H.141, H.224, H.251, H.277, H.325, D.365 Ligands: NI.12 Ligand excluded by PLIP NI.12: 5 residues within 4Å: Chain R: H.139, H.141, H.251, D.365 Ligands: NI.11 Ligand excluded by PLIP NI.13: 9 residues within 4Å: Chain U: H.139, H.141, G.172, H.224, H.251, H.277, H.325, D.365 Ligands: NI.14 Ligand excluded by PLIP NI.14: 5 residues within 4Å: Chain U: H.139, H.141, H.251, D.365 Ligands: NI.13 Ligand excluded by PLIP NI.15: 6 residues within 4Å: Chain X: H.139, H.224, H.251, H.277, D.365 Ligands: NI.16 Ligand excluded by PLIP NI.16: 5 residues within 4Å: Chain X: H.139, H.141, H.251, D.365 Ligands: NI.15 Ligand excluded by PLIP NI.17: 9 residues within 4Å: Chain 0: H.139, H.141, G.172, H.224, H.251, H.277, H.325, D.365 Ligands: NI.18 Ligand excluded by PLIP NI.18: 5 residues within 4Å: Chain 0: H.139, H.141, H.251, D.365 Ligands: NI.17 Ligand excluded by PLIP NI.19: 8 residues within 4Å: Chain 3: H.139, H.141, H.224, H.251, H.277, H.325, D.365 Ligands: NI.20 Ligand excluded by PLIP NI.20: 5 residues within 4Å: Chain 3: H.139, H.141, H.251, D.365 Ligands: NI.19 Ligand excluded by PLIP NI.21: 9 residues within 4Å: Chain 6: H.139, H.141, G.172, H.224, H.251, H.277, H.325, D.365 Ligands: NI.22 Ligand excluded by PLIP NI.22: 5 residues within 4Å: Chain 6: H.139, H.141, H.251, D.365 Ligands: NI.21 Ligand excluded by PLIP NI.23: 6 residues within 4Å: Chain 9: H.139, H.224, H.251, H.277, D.365 Ligands: NI.24 Ligand excluded by PLIP NI.24: 5 residues within 4Å: Chain 9: H.139, H.141, H.251, D.365 Ligands: NI.23 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Studer, G. et al., Crystal structure of urease from Yersinia enterocolitica. To Be Published

Release Date

2016-04-13

Peptides

Urease subunit gamma: ADGJMPSVY147
Urease subunit beta: BEHKNQTWZ258
Urease subunit alpha: CFILORUX0369

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

J
J

M
A

P
D

S
G

V
J

Y
A

1
D

4
G

7
J

B
B

E
E

H
H

K
K

N
B

Q
E

T
H

W
K

Z
B

2
E

5
H

8
K

C
C

F
F

I
I

L
L

O
C

R
F

U
I

X
L

0
C

3
F

6
I

9
L

Urease subunit gamma

Urease subunit beta

Urease subunit alpha

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