SMTL ID : 4z64.1 (1 other biounit)

the plant peptide hormone receptor complex in arabidopsis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TYS- ILE- TYS- THR- GLN: Phytosulfokine(Non-covalent)

TYS-ILE-TYS-THR-GLN.1: 28 residues within 4Å: Chain A: R.277, G.301, T.302, N.323, A.325, R.326, S.347, S.349, V.373, T.375, V.398, A.400, N.401, D.422, S.424, W.425, Y.444, F.480, P.481, F.482, F.483, M.484, K.485, E.488, A.492, F.501 Ligands: NAG-NAG.2, NAG.6 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:A.325, A:T.375, A:V.398, A:A.400, A:W.425, A:Y.444, A:F.483, A:K.485, A:K.485, A:F.501 Hydrogen bonds: A:T.302, A:N.323, A:R.326, A:S.347, A:S.349, A:S.349, A:T.375, A:D.422, A:F.483, A:F.483, A:K.485, A:K.485 Salt bridges: A:R.277, A:K.485, A:K.485

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: W.230, T.254, R.277, N.278 Ligands: TYS-ILE-TYS-THR-GLN.1 No protein-ligand interaction detected (PLIP)

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.83, S.85, D.107 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.107 Hydrogen bonds: A:N.83, A:S.85, A:D.107, A:D.107 NAG.4: 7 residues within 4Å: Chain A: T.119, S.120, I.121, N.122, H.143, H.146, N.147 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.143, A:H.146 Hydrogen bonds: A:S.120, A:S.120, A:I.121, A:N.147 NAG.5: 5 residues within 4Å: Chain A: K.263, N.267, N.288, T.290, A.291 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.267, A:N.288 NAG.6: 6 residues within 4Å: Chain A: R.326, N.350, L.376 Ligands: TYS-ILE-TYS-THR-GLN.1, TYS-ILE-TYS-THR-GLN.1, SO4.11 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.376 Hydrogen bonds: A:R.326, A:N.350 NAG.7: 3 residues within 4Å: Chain A: Q.332, N.355, S.358 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.332, A:N.355, A:S.358 NAG.8: 6 residues within 4Å: Chain A: N.401, R.403, W.425, N.449, E.488, H.509 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.401, A:R.403 NAG.9: 2 residues within 4Å: Chain A: N.510, N.511 No protein-ligand interaction detected (PLIP) NAG.10: 3 residues within 4Å: Chain A: N.599, H.611 Ligands: SO4.13 No protein-ligand interaction detected (PLIP) NAG.14: 4 residues within 4Å: Chain B: L.126, N.150, N.174, N.197 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.150, B:N.197

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 3 residues within 4Å: Chain A: R.304, R.326 Ligands: NAG.6 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.304, A:R.326 SO4.12: 4 residues within 4Å: Chain A: W.230, Q.253, R.277, Q.494 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.230, A:Q.253, A:Q.494 Salt bridges: A:R.277 SO4.13: 4 residues within 4Å: Chain A: P.598, N.599 Chain B: R.144 Ligands: NAG.10 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.144, A:N.599, A:N.599 SO4.15: 3 residues within 4Å: Chain B: A.196, N.197, S.207 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.197, B:N.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Allosteric receptor activation by the plant peptide hormone phytosulfokine. Nature (2015)

Release Date

2016-03-02

Peptides

Phytosulfokine receptor 1: A
Somatic embryogenesis receptor kinase 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Phytosulfokine receptor 1

Somatic embryogenesis receptor kinase 1

Related Entries With Identical Sequence