SMTL ID : 4z8f.1

Fab structure of antibody S1-15 in complex with ssDNA DNA, 5'-p5(dT)p-3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

2 x DT- DT- DT- DT: 5'-D(P*TP*TP*TP*TP*T)-3'(Non-covalent)

DT-DT-DT-DT.1: 8 residues within 4Å: Chain A: A.33, R.50, R.52, S.55, N.56, R.102, P.105, L.106 Protein-ligand interaction information (PLIP) not available DT-DT-DT-DT.2: 9 residues within 4Å: Chain A: V.2, G.26, F.27, T.28, Y.32, R.100, Y.108, Y.116 Chain B: R.55 12 PLIP interactions: 10 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.28, A:T.28, A:T.28, A:Y.32, A:Y.108, A:Y.108, A:Y.108, A:Y.116 Water bridges: A:E.1, B:R.55 Salt bridges: A:R.100, B:R.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haji-Ghassemi, O. et al., Structural Basis for Antibody Recognition of Lipid A: INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA. J.Biol.Chem. (2015)

Release Date

2015-06-24

Peptides

S1-15 Fab (IgG2b) heavy chain: A
S1-15 Fab (IgG2b kappa) light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

S1-15 Fab (IgG2b) heavy chain

S1-15 Fab (IgG2b kappa) light chain

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