SMTL ID : 4z8q.1

CRYSTAL STRUCTURE OF AvrRxo1-ORF1:AvrRxo1-ORF2 COMPLEX, SELENOMETHIONINE SUBSTITUTED.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

hetero-2-2-mer

Ligands

10 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: A.75, T.76, G.77, K.78, T.79, R.199 Ligands: PO4.5 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:A.75, A:T.76, A:G.77, A:K.78, A:T.79, A:T.79 Water bridges: A:A.75, A:G.77, A:R.199 Salt bridges: A:R.199 PO4.2: 2 residues within 4Å: Chain A: K.179, S.236 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.179 PO4.3: 7 residues within 4Å: Chain A: S.275, P.276, Q.277, L.278 Chain B: L.23, D.27 Chain D: R.19 5 PLIP interactions: 1 interactions with chain D, 4 interactions with chain A Hydrogen bonds: D:R.19, A:S.275, A:Q.277, A:L.278 Water bridges: A:Q.277 PO4.4: 5 residues within 4Å: Chain A: R.162, E.163, N.223 Chain B: E.65, I.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.162, A:E.163, A:E.163, A:N.223 PO4.5: 7 residues within 4Å: Chain A: N.73, T.74, A.75, T.76, K.78, R.199 Ligands: PO4.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:A.75, A:T.76 Water bridges: A:K.78, A:K.78, A:R.199, A:R.199 Salt bridges: A:K.78, A:R.199 PO4.6: 7 residues within 4Å: Chain C: A.75, T.76, G.77, K.78, T.79, R.199 Ligands: PO4.10 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:A.75, C:T.76, C:G.77, C:K.78, C:T.79 Water bridges: C:A.75, C:G.77, C:R.199 Salt bridges: C:R.199 PO4.7: 2 residues within 4Å: Chain C: K.179, S.236 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:K.179 PO4.8: 7 residues within 4Å: Chain B: R.19 Chain C: S.275, P.276, Q.277, L.278 Chain D: L.23, D.27 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:S.275, C:Q.277, C:L.278, B:R.19 Water bridges: C:Q.277 PO4.9: 5 residues within 4Å: Chain C: R.162, E.163, N.223 Chain D: E.65, I.69 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:R.162, C:E.163, C:E.163, C:E.163, C:N.223, D:E.65 PO4.10: 7 residues within 4Å: Chain C: N.73, T.74, A.75, T.76, K.78, R.199 Ligands: PO4.6 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:A.75, C:T.76 Water bridges: C:K.78, C:K.78, C:R.199, C:R.199 Salt bridges: C:K.78, C:R.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, Q. et al., Crystal Structure of Xanthomonas AvrRxo1-ORF1, a Type III Effector with a Polynucleotide Kinase Domain, and Its Interactor AvrRxo1-ORF2. Structure (2015)

Release Date

2015-09-23

Peptides

AvrRxo1-ORF1: AC
AvrRxo1-ORF2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

AvrRxo1-ORF1

AvrRxo1-ORF2

Related Entries With Identical Sequence