- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 4LU: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol(Non-covalent)
- 2 x FZZ: 1-deoxy-5-O-phosphono-1-[(10aR)-2,2,3,4-tetramethyl-8,10-dioxo-1,2,8,9,10,10a-hexahydro-6H-indeno[1,7-ef]pyrimido[4,5-b][1,4]diazepin-6-yl]-D-ribitol(Non-covalent)
FZZ.2: 23 residues within 4Å:- Chain A: T.153, N.168, W.169, S.170, I.171, A.172, R.173, L.185, Q.190, H.191, S.223, S.224, M.225, P.226, E.233, C.316, T.323, I.327, K.391
- Ligands: 4LU.1, MN.3, K.4, 4LV.6
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:I.171, A:I.171, A:T.323, A:I.327
- Hydrogen bonds: A:N.168, A:I.171, A:I.171, A:R.173, A:L.185, A:Q.190, A:H.191, A:S.224, A:M.225
- Water bridges: A:S.170, A:I.187, A:I.192, A:K.391, A:K.391
- Salt bridges: A:H.191, A:K.391
FZZ.8: 23 residues within 4Å:- Chain B: T.153, N.168, W.169, S.170, I.171, A.172, R.173, L.185, Q.190, H.191, S.223, S.224, M.225, P.226, E.233, C.316, T.323, I.327, K.391
- Ligands: 4LU.7, MN.9, K.10, 4LV.12
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:I.171, B:I.171, B:T.323, B:I.327
- Hydrogen bonds: B:N.168, B:I.171, B:I.171, B:R.173, B:L.185, B:Q.190, B:H.191, B:S.224, B:M.225
- Water bridges: B:S.170, B:I.187, B:I.192, B:K.391, B:K.391
- Salt bridges: B:H.191, B:K.391
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.3: 6 residues within 4Å:- Chain A: N.168, H.191, E.233
- Ligands: 4LU.1, FZZ.2, K.4
5 PLIP interactions:2 interactions with chain A, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions- Metal complexes: A:H.191, A:E.233, 4LU.1, H2O.2, H2O.5
MN.9: 6 residues within 4Å:- Chain B: N.168, H.191, E.233
- Ligands: 4LU.7, FZZ.8, K.10
5 PLIP interactions:2 interactions with chain B, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions- Metal complexes: B:H.191, B:E.233, 4LU.7, H2O.19, H2O.23
- 4 x K: POTASSIUM ION(Non-covalent)
K.4: 8 residues within 4Å:- Chain A: W.169, A.222, S.223, M.225, E.233
- Ligands: 4LU.1, FZZ.2, MN.3
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Ligand interactions- Metal complexes: A:A.222, A:M.225, A:E.233, 4LU.1
K.5: 4 residues within 4Å:- Chain A: R.421, D.427, D.459, L.461
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:R.421, A:D.427, A:D.459, A:L.461, H2O.30
K.10: 8 residues within 4Å:- Chain B: W.169, A.222, S.223, M.225, E.233
- Ligands: 4LU.7, FZZ.8, MN.9
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Ligand interactions- Metal complexes: B:A.222, B:M.225, B:E.233, 4LU.7
K.11: 4 residues within 4Å:- Chain B: R.421, D.427, D.459, L.461
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:R.421, B:D.427, B:D.459, B:L.461, H2O.13
- 2 x 4LV: (2E)-2-methyl-3-phenylprop-2-enoic acid(Non-covalent)
4LV.6: 13 residues within 4Å:- Chain A: R.173, L.185, I.187, Q.190, F.280, E.282, M.283, Y.394, T.395, F.437, L.439
- Ligands: 4LU.1, FZZ.2
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:I.187, A:Y.394, A:T.395, A:L.439
- Water bridges: A:M.283
- Salt bridges: A:R.173
- pi-Stacking: A:F.437
4LV.12: 13 residues within 4Å:- Chain B: R.173, L.185, I.187, Q.190, F.280, E.282, M.283, Y.394, T.395, F.437, L.439
- Ligands: 4LU.7, FZZ.8
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:I.187, B:Y.394, B:T.395, B:L.439
- Water bridges: B:M.283
- Salt bridges: B:R.173
- pi-Stacking: B:F.437
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Payne, K.A. et al., New cofactor supports alpha , beta-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition. Nature (2015)
- Release Date
- 2015-06-17
- Peptides
- Fdc1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 4LU: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol(Non-covalent)
- 2 x FZZ: 1-deoxy-5-O-phosphono-1-[(10aR)-2,2,3,4-tetramethyl-8,10-dioxo-1,2,8,9,10,10a-hexahydro-6H-indeno[1,7-ef]pyrimido[4,5-b][1,4]diazepin-6-yl]-D-ribitol(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 2 x 4LV: (2E)-2-methyl-3-phenylprop-2-enoic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Payne, K.A. et al., New cofactor supports alpha , beta-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition. Nature (2015)
- Release Date
- 2015-06-17
- Peptides
- Fdc1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A