- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.71 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x 4LR: Dimethylallyl monophosphate(Non-covalent)
- 12 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.2: 17 residues within 4Å:- Chain C: T.12, G.13, A.14, S.15, S.39, A.41, V.45, S.104, T.105, T.107, R.139, E.140
- Chain E: W.84, M.85, C.116, R.122
- Ligands: 4LR.1
23 PLIP interactions:21 interactions with chain C, 2 interactions with chain E- Hydrophobic interactions: C:V.45, E:W.84
- Hydrogen bonds: C:G.13, C:G.13, C:S.15, C:S.39, C:S.39, C:S.104, C:T.105, C:T.107, C:R.139, C:R.139, C:E.140, E:R.122
- Water bridges: C:K.40, C:A.41, C:S.104, C:G.106, C:G.106, C:E.121, C:E.121, C:E.121, C:R.139
FMN.9: 17 residues within 4Å:- Chain D: T.12, G.13, A.14, S.15, S.39, A.41, V.45, S.104, T.105, T.107, R.139, E.140
- Chain G: W.84, M.85, C.116, R.122
- Ligands: 4LR.8
23 PLIP interactions:21 interactions with chain D, 2 interactions with chain G- Hydrophobic interactions: D:V.45, G:W.84
- Hydrogen bonds: D:G.13, D:G.13, D:S.15, D:S.39, D:S.39, D:S.104, D:T.105, D:T.107, D:R.139, D:R.139, D:E.140, G:R.122
- Water bridges: D:K.40, D:A.41, D:S.104, D:G.106, D:G.106, D:E.121, D:E.121, D:E.121, D:R.139
FMN.16: 17 residues within 4Å:- Chain A: T.12, G.13, A.14, S.15, S.39, A.41, V.45, S.104, T.105, T.107, R.139, E.140
- Chain H: W.84, M.85, C.116, R.122
- Ligands: 4LR.15
22 PLIP interactions:20 interactions with chain A, 2 interactions with chain H- Hydrophobic interactions: A:V.45, H:W.84
- Hydrogen bonds: A:G.13, A:G.13, A:S.15, A:S.39, A:S.39, A:S.104, A:T.105, A:T.107, A:T.107, A:R.139, A:R.139, H:R.122
- Water bridges: A:K.40, A:A.41, A:S.104, A:G.106, A:G.106, A:T.107, A:N.118, A:R.139
FMN.23: 17 residues within 4Å:- Chain B: T.12, G.13, A.14, S.15, S.39, A.41, V.45, S.104, T.105, T.107, R.139, E.140
- Chain F: W.84, M.85, C.116, R.122
- Ligands: 4LR.22
22 PLIP interactions:2 interactions with chain F, 20 interactions with chain B- Hydrophobic interactions: F:W.84, B:V.45
- Hydrogen bonds: F:R.122, B:G.13, B:G.13, B:S.15, B:S.39, B:S.39, B:S.104, B:T.105, B:T.107, B:T.107, B:R.139, B:R.139
- Water bridges: B:K.40, B:A.41, B:S.104, B:G.106, B:G.106, B:T.107, B:N.118, B:R.139
FMN.30: 17 residues within 4Å:- Chain G: T.12, G.13, A.14, S.15, S.39, A.41, V.45, S.104, T.105, T.107, R.139, E.140
- Chain I: W.84, M.85, C.116, R.122
- Ligands: 4LR.29
23 PLIP interactions:2 interactions with chain I, 21 interactions with chain G- Hydrophobic interactions: I:W.84, G:V.45
- Hydrogen bonds: I:R.122, G:G.13, G:G.13, G:S.15, G:S.39, G:S.39, G:S.104, G:T.105, G:T.107, G:T.107, G:R.139, G:R.139
- Water bridges: G:K.40, G:A.41, G:S.104, G:G.106, G:G.106, G:E.121, G:E.121, G:E.121, G:R.139
FMN.37: 17 residues within 4Å:- Chain H: T.12, G.13, A.14, S.15, S.39, A.41, V.45, S.104, T.105, T.107, R.139, E.140
- Chain K: W.84, M.85, C.116, R.122
- Ligands: 4LR.36
22 PLIP interactions:20 interactions with chain H, 2 interactions with chain K- Hydrophobic interactions: H:V.45, K:W.84
- Hydrogen bonds: H:G.13, H:G.13, H:S.15, H:S.39, H:S.39, H:S.104, H:T.105, H:T.107, H:R.139, H:R.139, H:E.140, K:R.122
- Water bridges: H:K.40, H:A.41, H:S.104, H:G.106, H:G.106, H:T.107, H:N.118, H:R.139
FMN.44: 17 residues within 4Å:- Chain E: T.12, G.13, A.14, S.15, S.39, A.41, V.45, S.104, T.105, T.107, R.139, E.140
- Chain L: W.84, M.85, C.116, R.122
- Ligands: 4LR.43
23 PLIP interactions:21 interactions with chain E, 2 interactions with chain L- Hydrophobic interactions: E:V.45, L:W.84
- Hydrogen bonds: E:G.13, E:G.13, E:S.15, E:S.39, E:S.39, E:S.104, E:T.105, E:T.107, E:T.107, E:R.139, E:R.139, L:R.122
- Water bridges: E:K.40, E:A.41, E:S.104, E:G.106, E:G.106, E:E.121, E:E.121, E:E.121, E:R.139
FMN.51: 17 residues within 4Å:- Chain F: T.12, G.13, A.14, S.15, S.39, A.41, V.45, S.104, T.105, T.107, R.139, E.140
- Chain J: W.84, M.85, C.116, R.122
- Ligands: 4LR.50
22 PLIP interactions:20 interactions with chain F, 2 interactions with chain J- Hydrophobic interactions: F:V.45, J:W.84
- Hydrogen bonds: F:G.13, F:G.13, F:S.15, F:S.39, F:S.39, F:S.104, F:T.105, F:T.107, F:R.139, F:R.139, F:E.140, J:R.122
- Water bridges: F:K.40, F:A.41, F:S.104, F:G.106, F:G.106, F:T.107, F:N.118, F:R.139
FMN.58: 17 residues within 4Å:- Chain A: W.84, M.85, C.116, R.122
- Chain K: T.12, G.13, A.14, S.15, S.39, A.41, V.45, S.104, T.105, T.107, R.139, E.140
- Ligands: 4LR.57
22 PLIP interactions:20 interactions with chain K, 2 interactions with chain A- Hydrophobic interactions: K:V.45, A:W.84
- Hydrogen bonds: K:G.13, K:G.13, K:S.15, K:S.39, K:S.39, K:S.104, K:T.105, K:T.107, K:R.139, K:R.139, A:R.122
- Water bridges: K:K.40, K:A.41, K:S.104, K:G.106, K:G.106, K:E.121, K:E.121, K:E.121, K:R.139
FMN.65: 17 residues within 4Å:- Chain C: W.84, M.85, C.116, R.122
- Chain L: T.12, G.13, A.14, S.15, S.39, A.41, V.45, S.104, T.105, T.107, R.139, E.140
- Ligands: 4LR.64
23 PLIP interactions:21 interactions with chain L, 2 interactions with chain C- Hydrophobic interactions: L:V.45, C:W.84
- Hydrogen bonds: L:G.13, L:G.13, L:S.15, L:S.39, L:S.39, L:S.104, L:T.105, L:T.107, L:T.107, L:R.139, L:R.139, L:E.140, C:R.122
- Water bridges: L:K.40, L:A.41, L:S.104, L:G.106, L:G.106, L:T.107, L:N.118, L:R.139
FMN.72: 17 residues within 4Å:- Chain D: W.84, M.85, C.116, R.122
- Chain I: T.12, G.13, A.14, S.15, S.39, A.41, V.45, S.104, T.105, T.107, R.139, E.140
- Ligands: 4LR.71
23 PLIP interactions:21 interactions with chain I, 2 interactions with chain D- Hydrophobic interactions: I:V.45, D:W.84
- Hydrogen bonds: I:G.13, I:G.13, I:S.15, I:S.39, I:S.39, I:S.104, I:T.105, I:T.107, I:T.107, I:R.139, I:R.139, I:E.140, D:R.122
- Water bridges: I:K.40, I:A.41, I:S.104, I:G.106, I:G.106, I:T.107, I:N.118, I:R.139
FMN.79: 17 residues within 4Å:- Chain B: W.84, M.85, C.116, R.122
- Chain J: T.12, G.13, A.14, S.15, S.39, A.41, V.45, S.104, T.105, T.107, R.139, E.140
- Ligands: 4LR.78
22 PLIP interactions:20 interactions with chain J, 2 interactions with chain B- Hydrophobic interactions: J:V.45, B:W.84
- Hydrogen bonds: J:G.13, J:G.13, J:S.15, J:S.39, J:S.39, J:S.104, J:T.105, J:T.107, J:R.139, J:R.139, B:R.122
- Water bridges: J:K.40, J:A.41, J:S.104, J:G.106, J:G.106, J:E.121, J:E.121, J:E.121, J:R.139
- 48 x SCN: THIOCYANATE ION(Non-functional Binders)
SCN.3: 1 residues within 4Å:- Ligands: SCN.60
Ligand excluded by PLIPSCN.4: 7 residues within 4Å:- Chain E: P.4, P.95, N.96, A.97, R.132, P.133
- Ligands: SCN.31
Ligand excluded by PLIPSCN.5: 1 residues within 4Å:- Chain A: Q.203
Ligand excluded by PLIPSCN.6: 3 residues within 4Å:- Chain A: R.131
- Chain I: V.160, T.189
Ligand excluded by PLIPSCN.10: 1 residues within 4Å:- Ligands: SCN.81
Ligand excluded by PLIPSCN.11: 7 residues within 4Å:- Chain G: P.4, P.95, N.96, A.97, R.132, P.133
- Ligands: SCN.45
Ligand excluded by PLIPSCN.12: 1 residues within 4Å:- Chain B: Q.203
Ligand excluded by PLIPSCN.13: 3 residues within 4Å:- Chain B: R.131
- Chain L: V.160, T.189
Ligand excluded by PLIPSCN.17: 1 residues within 4Å:- Ligands: SCN.67
Ligand excluded by PLIPSCN.18: 7 residues within 4Å:- Chain H: P.4, P.95, N.96, A.97, R.132, P.133
- Ligands: SCN.52
Ligand excluded by PLIPSCN.19: 1 residues within 4Å:- Chain C: Q.203
Ligand excluded by PLIPSCN.20: 3 residues within 4Å:- Chain C: R.131
- Chain J: V.160, T.189
Ligand excluded by PLIPSCN.24: 1 residues within 4Å:- Ligands: SCN.74
Ligand excluded by PLIPSCN.25: 7 residues within 4Å:- Chain F: P.4, P.95, N.96, A.97, R.132, P.133
- Ligands: SCN.38
Ligand excluded by PLIPSCN.26: 1 residues within 4Å:- Chain D: Q.203
Ligand excluded by PLIPSCN.27: 3 residues within 4Å:- Chain D: R.131
- Chain K: V.160, T.189
Ligand excluded by PLIPSCN.31: 1 residues within 4Å:- Ligands: SCN.4
Ligand excluded by PLIPSCN.32: 7 residues within 4Å:- Chain I: P.4, P.95, N.96, A.97, R.132, P.133
- Ligands: SCN.59
Ligand excluded by PLIPSCN.33: 1 residues within 4Å:- Chain E: Q.203
Ligand excluded by PLIPSCN.34: 3 residues within 4Å:- Chain A: V.160, T.189
- Chain E: R.131
Ligand excluded by PLIPSCN.38: 1 residues within 4Å:- Ligands: SCN.25
Ligand excluded by PLIPSCN.39: 7 residues within 4Å:- Chain K: P.4, P.95, N.96, A.97, R.132, P.133
- Ligands: SCN.73
Ligand excluded by PLIPSCN.40: 1 residues within 4Å:- Chain F: Q.203
Ligand excluded by PLIPSCN.41: 3 residues within 4Å:- Chain D: V.160, T.189
- Chain F: R.131
Ligand excluded by PLIPSCN.45: 1 residues within 4Å:- Ligands: SCN.11
Ligand excluded by PLIPSCN.46: 7 residues within 4Å:- Chain L: P.4, P.95, N.96, A.97, R.132, P.133
- Ligands: SCN.80
Ligand excluded by PLIPSCN.47: 1 residues within 4Å:- Chain G: Q.203
Ligand excluded by PLIPSCN.48: 3 residues within 4Å:- Chain B: V.160, T.189
- Chain G: R.131
Ligand excluded by PLIPSCN.52: 1 residues within 4Å:- Ligands: SCN.18
Ligand excluded by PLIPSCN.53: 7 residues within 4Å:- Chain J: P.4, P.95, N.96, A.97, R.132, P.133
- Ligands: SCN.66
Ligand excluded by PLIPSCN.54: 1 residues within 4Å:- Chain H: Q.203
Ligand excluded by PLIPSCN.55: 3 residues within 4Å:- Chain C: V.160, T.189
- Chain H: R.131
Ligand excluded by PLIPSCN.59: 1 residues within 4Å:- Ligands: SCN.32
Ligand excluded by PLIPSCN.60: 7 residues within 4Å:- Chain A: P.4, P.95, N.96, A.97, R.132, P.133
- Ligands: SCN.3
Ligand excluded by PLIPSCN.61: 1 residues within 4Å:- Chain I: Q.203
Ligand excluded by PLIPSCN.62: 3 residues within 4Å:- Chain E: V.160, T.189
- Chain I: R.131
Ligand excluded by PLIPSCN.66: 1 residues within 4Å:- Ligands: SCN.53
Ligand excluded by PLIPSCN.67: 7 residues within 4Å:- Chain C: P.4, P.95, N.96, A.97, R.132, P.133
- Ligands: SCN.17
Ligand excluded by PLIPSCN.68: 1 residues within 4Å:- Chain J: Q.203
Ligand excluded by PLIPSCN.69: 3 residues within 4Å:- Chain H: V.160, T.189
- Chain J: R.131
Ligand excluded by PLIPSCN.73: 1 residues within 4Å:- Ligands: SCN.39
Ligand excluded by PLIPSCN.74: 7 residues within 4Å:- Chain D: P.4, P.95, N.96, A.97, R.132, P.133
- Ligands: SCN.24
Ligand excluded by PLIPSCN.75: 1 residues within 4Å:- Chain K: Q.203
Ligand excluded by PLIPSCN.76: 3 residues within 4Å:- Chain F: V.160, T.189
- Chain K: R.131
Ligand excluded by PLIPSCN.80: 1 residues within 4Å:- Ligands: SCN.46
Ligand excluded by PLIPSCN.81: 7 residues within 4Å:- Chain B: P.4, P.95, N.96, A.97, R.132, P.133
- Ligands: SCN.10
Ligand excluded by PLIPSCN.82: 1 residues within 4Å:- Chain L: Q.203
Ligand excluded by PLIPSCN.83: 3 residues within 4Å:- Chain G: V.160, T.189
- Chain L: R.131
Ligand excluded by PLIP- 12 x K: POTASSIUM ION(Non-covalent)
K.7: 1 residues within 4Å:- Chain A: K.40
No protein-ligand interaction detected (PLIP)K.14: 1 residues within 4Å:- Chain B: K.40
No protein-ligand interaction detected (PLIP)K.21: 1 residues within 4Å:- Chain C: K.40
No protein-ligand interaction detected (PLIP)K.28: 1 residues within 4Å:- Chain D: K.40
No protein-ligand interaction detected (PLIP)K.35: 1 residues within 4Å:- Chain E: K.40
No protein-ligand interaction detected (PLIP)K.42: 1 residues within 4Å:- Chain F: K.40
No protein-ligand interaction detected (PLIP)K.49: 1 residues within 4Å:- Chain G: K.40
No protein-ligand interaction detected (PLIP)K.56: 1 residues within 4Å:- Chain H: K.40
No protein-ligand interaction detected (PLIP)K.63: 1 residues within 4Å:- Chain I: K.40
No protein-ligand interaction detected (PLIP)K.70: 1 residues within 4Å:- Chain J: K.40
No protein-ligand interaction detected (PLIP)K.77: 1 residues within 4Å:- Chain K: K.40
No protein-ligand interaction detected (PLIP)K.84: 1 residues within 4Å:- Chain L: K.40
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- White, M.D. et al., UbiX is a flavin prenyltransferase required for bacterial ubiquinone biosynthesis. Nature (2015)
- Release Date
- 2015-06-17
- Peptides
- Probable aromatic acid decarboxylase: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.71 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x 4LR: Dimethylallyl monophosphate(Non-covalent)
- 12 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 48 x SCN: THIOCYANATE ION(Non-functional Binders)
- 12 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- White, M.D. et al., UbiX is a flavin prenyltransferase required for bacterial ubiquinone biosynthesis. Nature (2015)
- Release Date
- 2015-06-17
- Peptides
- Probable aromatic acid decarboxylase: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
A