SMTL ID : 4zav.1

UbiX in complex with a covalent adduct between dimethylallyl monophosphate and reduced FMN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-12-mer

Ligands

12 x 4LS: 1-deoxy-1-[7,8-dimethyl-5-(3-methylbut-2-en-1-yl)-2,4-dioxo-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol(Non-covalent)

4LS.1: 22 residues within 4Å: Chain A: Y.169, W.200 Chain C: T.12, G.13, A.14, S.15, S.39, A.41, L.44, V.45, T.48, S.104, T.105, T.107, R.139, E.140 Chain E: W.84, A.89, S.90, C.116, R.122 Ligands: PO4.7 29 PLIP interactions: 7 interactions with chain E, 20 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: E:W.84, E:A.89, C:L.44, C:V.45, C:T.48, A:Y.169, A:W.200 Hydrogen bonds: E:C.116, E:R.122, C:G.13, C:S.15, C:S.39, C:S.39, C:S.104, C:T.105, C:T.107, C:R.139, C:R.139, C:E.140 Water bridges: E:C.116, E:C.116, E:N.117, C:K.40, C:A.41, C:G.106, C:E.121, C:E.121, C:E.121, C:R.139 4LS.8: 22 residues within 4Å: Chain B: Y.169, W.200 Chain D: T.12, G.13, A.14, S.15, S.39, A.41, L.44, V.45, T.48, S.104, T.105, T.107, R.139, E.140 Chain G: W.84, A.89, S.90, C.116, R.122 Ligands: PO4.14 29 PLIP interactions: 20 interactions with chain D, 2 interactions with chain B, 7 interactions with chain G Hydrophobic interactions: D:L.44, D:V.45, D:T.48, B:Y.169, B:W.200, G:W.84, G:A.89 Hydrogen bonds: D:G.13, D:S.15, D:S.39, D:S.39, D:S.104, D:T.105, D:T.107, D:R.139, D:R.139, D:E.140, G:C.116, G:R.122 Water bridges: D:K.40, D:A.41, D:G.106, D:E.121, D:E.121, D:E.121, D:R.139, G:C.116, G:C.116, G:N.117 4LS.15: 22 residues within 4Å: Chain A: T.12, G.13, A.14, S.15, S.39, A.41, L.44, V.45, T.48, S.104, T.105, T.107, R.139, E.140 Chain C: Y.169, W.200 Chain H: W.84, A.89, S.90, C.116, R.122 Ligands: PO4.21 27 PLIP interactions: 18 interactions with chain A, 2 interactions with chain C, 7 interactions with chain H Hydrophobic interactions: A:L.44, A:V.45, A:T.48, C:Y.169, C:W.200, H:W.84, H:A.89 Hydrogen bonds: A:G.13, A:S.15, A:S.39, A:S.39, A:S.104, A:T.105, A:T.107, A:T.107, A:R.139, A:R.139, H:C.116, H:R.122 Water bridges: A:K.40, A:A.41, A:G.106, A:T.107, A:R.139, H:C.116, H:C.116, H:N.117 4LS.22: 22 residues within 4Å: Chain B: T.12, G.13, A.14, S.15, S.39, A.41, L.44, V.45, T.48, S.104, T.105, T.107, R.139, E.140 Chain D: Y.169, W.200 Chain F: W.84, A.89, S.90, C.116, R.122 Ligands: PO4.28 27 PLIP interactions: 7 interactions with chain F, 18 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: F:W.84, F:A.89, B:L.44, B:V.45, B:T.48, D:Y.169, D:W.200 Hydrogen bonds: F:C.116, F:R.122, B:G.13, B:S.15, B:S.39, B:S.39, B:S.104, B:T.105, B:T.107, B:T.107, B:R.139, B:R.139 Water bridges: F:C.116, F:C.116, F:N.117, B:K.40, B:A.41, B:G.106, B:T.107, B:R.139 4LS.29: 22 residues within 4Å: Chain E: Y.169, W.200 Chain G: T.12, G.13, A.14, S.15, S.39, A.41, L.44, V.45, T.48, S.104, T.105, T.107, R.139, E.140 Chain I: W.84, A.89, S.90, C.116, R.122 Ligands: PO4.35 29 PLIP interactions: 7 interactions with chain I, 20 interactions with chain G, 2 interactions with chain E Hydrophobic interactions: I:W.84, I:A.89, G:L.44, G:V.45, G:T.48, E:Y.169, E:W.200 Hydrogen bonds: I:C.116, I:R.122, G:G.13, G:S.15, G:S.39, G:S.39, G:S.104, G:T.105, G:T.107, G:T.107, G:R.139, G:R.139 Water bridges: I:C.116, I:C.116, I:N.117, G:K.40, G:A.41, G:G.106, G:E.121, G:E.121, G:E.121, G:R.139 4LS.36: 22 residues within 4Å: Chain F: Y.169, W.200 Chain H: T.12, G.13, A.14, S.15, S.39, A.41, L.44, V.45, T.48, S.104, T.105, T.107, R.139, E.140 Chain K: W.84, A.89, S.90, C.116, R.122 Ligands: PO4.42 27 PLIP interactions: 7 interactions with chain K, 18 interactions with chain H, 2 interactions with chain F Hydrophobic interactions: K:W.84, K:A.89, H:L.44, H:V.45, H:T.48, F:Y.169, F:W.200 Hydrogen bonds: K:C.116, K:R.122, H:G.13, H:S.15, H:S.39, H:S.39, H:S.104, H:T.105, H:T.107, H:R.139, H:R.139, H:E.140 Water bridges: K:C.116, K:C.116, K:N.117, H:K.40, H:A.41, H:G.106, H:T.107, H:R.139 4LS.43: 22 residues within 4Å: Chain E: T.12, G.13, A.14, S.15, S.39, A.41, L.44, V.45, T.48, S.104, T.105, T.107, R.139, E.140 Chain G: Y.169, W.200 Chain L: W.84, A.89, S.90, C.116, R.122 Ligands: PO4.49 29 PLIP interactions: 20 interactions with chain E, 7 interactions with chain L, 2 interactions with chain G Hydrophobic interactions: E:L.44, E:V.45, E:T.48, L:W.84, L:A.89, G:Y.169, G:W.200 Hydrogen bonds: E:G.13, E:S.15, E:S.39, E:S.39, E:S.104, E:T.105, E:T.107, E:T.107, E:R.139, E:R.139, L:C.116, L:R.122 Water bridges: E:K.40, E:A.41, E:G.106, E:E.121, E:E.121, E:E.121, E:R.139, L:C.116, L:C.116, L:N.117 4LS.50: 22 residues within 4Å: Chain F: T.12, G.13, A.14, S.15, S.39, A.41, L.44, V.45, T.48, S.104, T.105, T.107, R.139, E.140 Chain H: Y.169, W.200 Chain J: W.84, A.89, S.90, C.116, R.122 Ligands: PO4.56 27 PLIP interactions: 18 interactions with chain F, 2 interactions with chain H, 7 interactions with chain J Hydrophobic interactions: F:L.44, F:V.45, F:T.48, H:Y.169, H:W.200, J:W.84, J:A.89 Hydrogen bonds: F:G.13, F:S.15, F:S.39, F:S.39, F:S.104, F:T.105, F:T.107, F:R.139, F:R.139, F:E.140, J:C.116, J:R.122 Water bridges: F:K.40, F:A.41, F:G.106, F:T.107, F:R.139, J:C.116, J:C.116, J:N.117 4LS.57: 22 residues within 4Å: Chain A: W.84, A.89, S.90, C.116, R.122 Chain I: Y.169, W.200 Chain K: T.12, G.13, A.14, S.15, S.39, A.41, L.44, V.45, T.48, S.104, T.105, T.107, R.139, E.140 Ligands: PO4.63 28 PLIP interactions: 19 interactions with chain K, 2 interactions with chain I, 7 interactions with chain A Hydrophobic interactions: K:L.44, K:V.45, K:T.48, I:Y.169, I:W.200, A:W.84, A:A.89 Hydrogen bonds: K:G.13, K:S.15, K:S.39, K:S.39, K:S.104, K:T.105, K:T.107, K:R.139, K:R.139, A:C.116, A:R.122 Water bridges: K:K.40, K:A.41, K:G.106, K:E.121, K:E.121, K:E.121, K:R.139, A:C.116, A:C.116, A:N.117 4LS.64: 22 residues within 4Å: Chain C: W.84, A.89, S.90, C.116, R.122 Chain J: Y.169, W.200 Chain L: T.12, G.13, A.14, S.15, S.39, A.41, L.44, V.45, T.48, S.104, T.105, T.107, R.139, E.140 Ligands: PO4.70 28 PLIP interactions: 7 interactions with chain C, 19 interactions with chain L, 2 interactions with chain J Hydrophobic interactions: C:W.84, C:A.89, L:L.44, L:V.45, L:T.48, J:Y.169, J:W.200 Hydrogen bonds: C:C.116, C:R.122, L:G.13, L:S.15, L:S.39, L:S.39, L:S.104, L:T.105, L:T.107, L:T.107, L:R.139, L:R.139, L:E.140 Water bridges: C:C.116, C:C.116, C:N.117, L:K.40, L:A.41, L:G.106, L:T.107, L:R.139 4LS.71: 22 residues within 4Å: Chain D: W.84, A.89, S.90, C.116, R.122 Chain I: T.12, G.13, A.14, S.15, S.39, A.41, L.44, V.45, T.48, S.104, T.105, T.107, R.139, E.140 Chain K: Y.169, W.200 Ligands: PO4.77 28 PLIP interactions: 7 interactions with chain D, 19 interactions with chain I, 2 interactions with chain K Hydrophobic interactions: D:W.84, D:A.89, I:L.44, I:V.45, I:T.48, K:Y.169, K:W.200 Hydrogen bonds: D:C.116, D:R.122, I:G.13, I:S.15, I:S.39, I:S.39, I:S.104, I:T.105, I:T.107, I:T.107, I:R.139, I:R.139, I:E.140 Water bridges: D:C.116, D:C.116, D:N.117, I:K.40, I:A.41, I:G.106, I:T.107, I:R.139 4LS.78: 22 residues within 4Å: Chain B: W.84, A.89, S.90, C.116, R.122 Chain J: T.12, G.13, A.14, S.15, S.39, A.41, L.44, V.45, T.48, S.104, T.105, T.107, R.139, E.140 Chain L: Y.169, W.200 Ligands: PO4.84 28 PLIP interactions: 19 interactions with chain J, 7 interactions with chain B, 2 interactions with chain L Hydrophobic interactions: J:L.44, J:V.45, J:T.48, B:W.84, B:A.89, L:Y.169, L:W.200 Hydrogen bonds: J:G.13, J:S.15, J:S.39, J:S.39, J:S.104, J:T.105, J:T.107, J:R.139, J:R.139, B:C.116, B:R.122 Water bridges: J:K.40, J:A.41, J:G.106, J:E.121, J:E.121, J:E.121, J:R.139, B:C.116, B:C.116, B:N.117

48 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.2: 5 residues within 4Å: Chain A: P.95, N.96, A.97, R.132, P.133 Ligand excluded by PLIP SCN.3: 4 residues within 4Å: Chain A: H.170, M.196, L.197, P.198 Ligand excluded by PLIP SCN.4: 3 residues within 4Å: Chain A: E.5, R.6 Chain I: R.199 Ligand excluded by PLIP SCN.5: 2 residues within 4Å: Chain A: Q.59, A.60 Ligand excluded by PLIP SCN.9: 5 residues within 4Å: Chain B: P.95, N.96, A.97, R.132, P.133 Ligand excluded by PLIP SCN.10: 4 residues within 4Å: Chain B: H.170, M.196, L.197, P.198 Ligand excluded by PLIP SCN.11: 3 residues within 4Å: Chain B: E.5, R.6 Chain L: R.199 Ligand excluded by PLIP SCN.12: 2 residues within 4Å: Chain B: Q.59, A.60 Ligand excluded by PLIP SCN.16: 5 residues within 4Å: Chain C: P.95, N.96, A.97, R.132, P.133 Ligand excluded by PLIP SCN.17: 4 residues within 4Å: Chain C: H.170, M.196, L.197, P.198 Ligand excluded by PLIP SCN.18: 3 residues within 4Å: Chain C: E.5, R.6 Chain J: R.199 Ligand excluded by PLIP SCN.19: 2 residues within 4Å: Chain C: Q.59, A.60 Ligand excluded by PLIP SCN.23: 5 residues within 4Å: Chain D: P.95, N.96, A.97, R.132, P.133 Ligand excluded by PLIP SCN.24: 4 residues within 4Å: Chain D: H.170, M.196, L.197, P.198 Ligand excluded by PLIP SCN.25: 3 residues within 4Å: Chain D: E.5, R.6 Chain K: R.199 Ligand excluded by PLIP SCN.26: 2 residues within 4Å: Chain D: Q.59, A.60 Ligand excluded by PLIP SCN.30: 5 residues within 4Å: Chain E: P.95, N.96, A.97, R.132, P.133 Ligand excluded by PLIP SCN.31: 4 residues within 4Å: Chain E: H.170, M.196, L.197, P.198 Ligand excluded by PLIP SCN.32: 3 residues within 4Å: Chain A: R.199 Chain E: E.5, R.6 Ligand excluded by PLIP SCN.33: 2 residues within 4Å: Chain E: Q.59, A.60 Ligand excluded by PLIP SCN.37: 5 residues within 4Å: Chain F: P.95, N.96, A.97, R.132, P.133 Ligand excluded by PLIP SCN.38: 4 residues within 4Å: Chain F: H.170, M.196, L.197, P.198 Ligand excluded by PLIP SCN.39: 3 residues within 4Å: Chain D: R.199 Chain F: E.5, R.6 Ligand excluded by PLIP SCN.40: 2 residues within 4Å: Chain F: Q.59, A.60 Ligand excluded by PLIP SCN.44: 5 residues within 4Å: Chain G: P.95, N.96, A.97, R.132, P.133 Ligand excluded by PLIP SCN.45: 4 residues within 4Å: Chain G: H.170, M.196, L.197, P.198 Ligand excluded by PLIP SCN.46: 3 residues within 4Å: Chain B: R.199 Chain G: E.5, R.6 Ligand excluded by PLIP SCN.47: 2 residues within 4Å: Chain G: Q.59, A.60 Ligand excluded by PLIP SCN.51: 5 residues within 4Å: Chain H: P.95, N.96, A.97, R.132, P.133 Ligand excluded by PLIP SCN.52: 4 residues within 4Å: Chain H: H.170, M.196, L.197, P.198 Ligand excluded by PLIP SCN.53: 3 residues within 4Å: Chain C: R.199 Chain H: E.5, R.6 Ligand excluded by PLIP SCN.54: 2 residues within 4Å: Chain H: Q.59, A.60 Ligand excluded by PLIP SCN.58: 5 residues within 4Å: Chain I: P.95, N.96, A.97, R.132, P.133 Ligand excluded by PLIP SCN.59: 4 residues within 4Å: Chain I: H.170, M.196, L.197, P.198 Ligand excluded by PLIP SCN.60: 3 residues within 4Å: Chain E: R.199 Chain I: E.5, R.6 Ligand excluded by PLIP SCN.61: 2 residues within 4Å: Chain I: Q.59, A.60 Ligand excluded by PLIP SCN.65: 5 residues within 4Å: Chain J: P.95, N.96, A.97, R.132, P.133 Ligand excluded by PLIP SCN.66: 4 residues within 4Å: Chain J: H.170, M.196, L.197, P.198 Ligand excluded by PLIP SCN.67: 3 residues within 4Å: Chain H: R.199 Chain J: E.5, R.6 Ligand excluded by PLIP SCN.68: 2 residues within 4Å: Chain J: Q.59, A.60 Ligand excluded by PLIP SCN.72: 5 residues within 4Å: Chain K: P.95, N.96, A.97, R.132, P.133 Ligand excluded by PLIP SCN.73: 4 residues within 4Å: Chain K: H.170, M.196, L.197, P.198 Ligand excluded by PLIP SCN.74: 3 residues within 4Å: Chain F: R.199 Chain K: E.5, R.6 Ligand excluded by PLIP SCN.75: 2 residues within 4Å: Chain K: Q.59, A.60 Ligand excluded by PLIP SCN.79: 5 residues within 4Å: Chain L: P.95, N.96, A.97, R.132, P.133 Ligand excluded by PLIP SCN.80: 4 residues within 4Å: Chain L: H.170, M.196, L.197, P.198 Ligand excluded by PLIP SCN.81: 3 residues within 4Å: Chain G: R.199 Chain L: E.5, R.6 Ligand excluded by PLIP SCN.82: 2 residues within 4Å: Chain L: Q.59, A.60 Ligand excluded by PLIP

12 x NA: SODIUM ION(Non-functional Binders)

NA.6: 3 residues within 4Å: Chain A: E.121 Chain H: A.115, N.117 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain H Hydrogen bonds: A:E.121 Water bridges: H:N.117 NA.13: 3 residues within 4Å: Chain B: E.121 Chain F: A.115, N.117 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F Hydrogen bonds: B:E.121 Water bridges: F:N.117 NA.20: 3 residues within 4Å: Chain C: E.121 Chain E: A.115, N.117 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:N.117, C:E.121 NA.27: 3 residues within 4Å: Chain D: E.121 Chain G: A.115, N.117 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain G Hydrogen bonds: D:E.121, G:N.117 NA.34: 3 residues within 4Å: Chain E: E.121 Chain L: A.115, N.117 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain E Water bridges: L:N.117 Hydrogen bonds: E:E.121 NA.41: 3 residues within 4Å: Chain F: E.121 Chain J: A.115, N.117 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain J Hydrogen bonds: F:E.121, J:N.117 NA.48: 3 residues within 4Å: Chain G: E.121 Chain I: A.115, N.117 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain G Water bridges: I:N.117 Hydrogen bonds: G:E.121 NA.55: 3 residues within 4Å: Chain H: E.121 Chain K: A.115, N.117 2 PLIP interactions: 1 interactions with chain K, 1 interactions with chain H Hydrogen bonds: K:N.117, H:E.121 NA.62: 3 residues within 4Å: Chain D: A.115, N.117 Chain I: E.121 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain D Hydrogen bonds: I:E.121 Water bridges: D:N.117 NA.69: 3 residues within 4Å: Chain B: A.115, N.117 Chain J: E.121 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain J Hydrogen bonds: B:N.117, J:E.121 NA.76: 3 residues within 4Å: Chain A: A.115, N.117 Chain K: E.121 2 PLIP interactions: 1 interactions with chain K, 1 interactions with chain A Hydrogen bonds: K:E.121, A:N.117 NA.83: 3 residues within 4Å: Chain C: A.115, N.117 Chain L: E.121 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain C Hydrogen bonds: L:E.121 Water bridges: C:N.117

12 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.7: 10 residues within 4Å: Chain A: Y.169, R.185 Chain C: R.139, E.140 Chain E: S.90, G.91, S.92, R.122, K.129 Ligands: 4LS.1 11 PLIP interactions: 2 interactions with chain A, 5 interactions with chain C, 4 interactions with chain E Hydrogen bonds: A:Y.169, C:E.140, C:E.140, E:G.91, E:S.92 Salt bridges: A:R.185, C:R.139, E:R.122, E:K.129 Water bridges: C:R.139, C:A.141 PO4.14: 10 residues within 4Å: Chain B: Y.169, R.185 Chain D: R.139, E.140 Chain G: S.90, G.91, S.92, R.122, K.129 Ligands: 4LS.8 11 PLIP interactions: 4 interactions with chain G, 5 interactions with chain D, 2 interactions with chain B Hydrogen bonds: G:G.91, G:S.92, D:E.140, D:E.140, B:Y.169 Salt bridges: G:R.122, G:K.129, D:R.139, B:R.185 Water bridges: D:R.139, D:A.141 PO4.21: 10 residues within 4Å: Chain A: R.139, E.140 Chain C: Y.169, R.185 Chain H: S.90, G.91, S.92, R.122, K.129 Ligands: 4LS.15 10 PLIP interactions: 5 interactions with chain A, 4 interactions with chain H, 1 interactions with chain C Hydrogen bonds: A:E.140, A:E.140, H:G.91, H:S.92 Water bridges: A:R.139, A:A.141 Salt bridges: A:R.139, H:R.122, H:K.129, C:R.185 PO4.28: 10 residues within 4Å: Chain B: R.139, E.140 Chain D: Y.169, R.185 Chain F: S.90, G.91, S.92, R.122, K.129 Ligands: 4LS.22 10 PLIP interactions: 4 interactions with chain F, 5 interactions with chain B, 1 interactions with chain D Hydrogen bonds: F:G.91, F:S.92, B:E.140, B:E.140 Salt bridges: F:R.122, F:K.129, B:R.139, D:R.185 Water bridges: B:R.139, B:A.141 PO4.35: 10 residues within 4Å: Chain E: Y.169, R.185 Chain G: R.139, E.140 Chain I: S.90, G.91, S.92, R.122, K.129 Ligands: 4LS.29 11 PLIP interactions: 2 interactions with chain E, 5 interactions with chain G, 4 interactions with chain I Hydrogen bonds: E:Y.169, G:E.140, G:E.140, I:G.91, I:S.92 Salt bridges: E:R.185, G:R.139, I:R.122, I:K.129 Water bridges: G:R.139, G:A.141 PO4.42: 10 residues within 4Å: Chain F: Y.169, R.185 Chain H: R.139, E.140 Chain K: S.90, G.91, S.92, R.122, K.129 Ligands: 4LS.36 10 PLIP interactions: 4 interactions with chain K, 5 interactions with chain H, 1 interactions with chain F Hydrogen bonds: K:G.91, K:S.92, H:E.140, H:E.140 Salt bridges: K:R.122, K:K.129, H:R.139, F:R.185 Water bridges: H:R.139, H:A.141 PO4.49: 10 residues within 4Å: Chain E: R.139, E.140 Chain G: Y.169, R.185 Chain L: S.90, G.91, S.92, R.122, K.129 Ligands: 4LS.43 11 PLIP interactions: 2 interactions with chain G, 4 interactions with chain L, 5 interactions with chain E Hydrogen bonds: G:Y.169, L:G.91, L:S.92, E:E.140, E:E.140 Salt bridges: G:R.185, L:R.122, L:K.129, E:R.139 Water bridges: E:R.139, E:A.141 PO4.56: 10 residues within 4Å: Chain F: R.139, E.140 Chain H: Y.169, R.185 Chain J: S.90, G.91, S.92, R.122, K.129 Ligands: 4LS.50 10 PLIP interactions: 5 interactions with chain F, 1 interactions with chain H, 4 interactions with chain J Hydrogen bonds: F:E.140, F:E.140, J:G.91, J:S.92 Water bridges: F:R.139, F:A.141 Salt bridges: F:R.139, H:R.185, J:R.122, J:K.129 PO4.63: 10 residues within 4Å: Chain A: S.90, G.91, S.92, R.122, K.129 Chain I: Y.169, R.185 Chain K: R.139, E.140 Ligands: 4LS.57 11 PLIP interactions: 2 interactions with chain I, 4 interactions with chain A, 5 interactions with chain K Hydrogen bonds: I:Y.169, A:G.91, A:S.92, K:E.140, K:E.140 Salt bridges: I:R.185, A:R.122, A:K.129, K:R.139 Water bridges: K:R.139, K:A.141 PO4.70: 10 residues within 4Å: Chain C: S.90, G.91, S.92, R.122, K.129 Chain J: Y.169, R.185 Chain L: R.139, E.140 Ligands: 4LS.64 10 PLIP interactions: 5 interactions with chain L, 4 interactions with chain C, 1 interactions with chain J Hydrogen bonds: L:E.140, L:E.140, C:G.91, C:S.92 Water bridges: L:R.139, L:A.141 Salt bridges: L:R.139, C:R.122, C:K.129, J:R.185 PO4.77: 10 residues within 4Å: Chain D: S.90, G.91, S.92, R.122, K.129 Chain I: R.139, E.140 Chain K: Y.169, R.185 Ligands: 4LS.71 10 PLIP interactions: 5 interactions with chain I, 4 interactions with chain D, 1 interactions with chain K Hydrogen bonds: I:E.140, I:E.140, D:G.91, D:S.92 Water bridges: I:R.139, I:A.141 Salt bridges: I:R.139, D:R.122, D:K.129, K:R.185 PO4.84: 10 residues within 4Å: Chain B: S.90, G.91, S.92, R.122, K.129 Chain J: R.139, E.140 Chain L: Y.169, R.185 Ligands: 4LS.78 11 PLIP interactions: 2 interactions with chain L, 4 interactions with chain B, 5 interactions with chain J Hydrogen bonds: L:Y.169, B:G.91, B:S.92, J:E.140, J:E.140 Salt bridges: L:R.185, B:R.122, B:K.129, J:R.139 Water bridges: J:R.139, J:A.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

White, M.D. et al., UbiX is a flavin prenyltransferase required for bacterial ubiquinone biosynthesis. Nature (2015)

Release Date

2015-06-17

Peptides

UbiX: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

UbiX

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