SMTL ID : 4zbb.1 (1 other biounit)

Crystal structure of the glutathione transferase URE2P8 from Phanerochaete chrysosporium complexed with glutathionyl-S-dinitrobenzene.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x GDN: GLUTATHIONE S-(2,4 DINITROBENZENE)(Non-covalent)

GDN.1: 19 residues within 4Å: Chain A: H.13, S.16, H.18, V.40, Q.45, K.46, R.58, T.59, P.60, E.74, S.75, G.120, V.123, Y.128, W.176 Chain B: T.113 Ligands: GDN.2, ACT.8, ACT.9 21 PLIP interactions: 17 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Q.45, A:R.58, A:T.59, A:T.59, A:E.74, A:S.75 Water bridges: A:K.21, A:K.46, A:K.46, A:T.59, A:E.74, A:E.74, A:E.74, B:T.113, B:T.113, B:Y.118, B:Y.118 Salt bridges: A:H.18, A:K.21, A:K.46, A:R.58 GDN.2: 12 residues within 4Å: Chain A: H.13, A.15, S.16, V.40, A.41, V.123, L.127, Y.128, W.176, M.179, F.183 Ligands: GDN.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.40, A:V.123, A:L.127 Hydrogen bonds: A:H.13 Salt bridges: A:K.14 GDN.6: 20 residues within 4Å: Chain A: T.113 Chain B: H.13, S.16, H.18, V.40, Q.45, K.46, R.58, T.59, P.60, E.74, S.75, G.120, V.123, W.124, Y.128, W.176 Ligands: ACT.3, ACT.4, GDN.7 17 PLIP interactions: 15 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.45, B:R.58, B:T.59, B:T.59, B:E.74, B:S.75, A:T.113 Water bridges: B:K.46, B:E.74, B:S.75, B:N.76, B:N.76, A:T.113 Salt bridges: B:H.18, B:K.21, B:K.46, B:R.58 GDN.7: 13 residues within 4Å: Chain B: H.13, K.14, A.15, S.16, A.41, W.124, Y.128, W.176, M.179, F.183, R.216, M.220 Ligands: GDN.6 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:A.41 Hydrogen bonds: B:H.13, B:Y.128 Water bridges: B:A.41 Salt bridges: B:K.14

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 8 residues within 4Å: Chain A: Y.118, R.139 Chain B: R.58, G.120, Q.121, W.124 Ligands: ACT.4, GDN.6 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:W.124 Hydrogen bonds: B:Q.121, B:Q.121, A:Y.118 Water bridges: B:R.58, B:R.58 Salt bridges: B:R.58, A:R.139 ACT.4: 5 residues within 4Å: Chain A: R.139, E.143 Chain B: R.58 Ligands: ACT.3, GDN.6 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Water bridges: A:R.146, B:R.58, B:R.58 Salt bridges: A:R.139, B:R.58 ACT.8: 8 residues within 4Å: Chain A: R.58, G.120, Q.121, W.124 Chain B: Y.118, R.139 Ligands: GDN.1, ACT.9 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:W.124 Hydrogen bonds: A:Q.121 Water bridges: A:R.58, A:R.58, B:Y.118 Salt bridges: A:R.58, B:R.139 ACT.9: 6 residues within 4Å: Chain A: R.58, W.124 Chain B: R.139, E.143 Ligands: GDN.1, ACT.8 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.58, B:R.139

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain A: L.12, H.13, S.16, G.19, T.59, P.60 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain B: L.12, H.13, S.16, G.19, T.59, P.60 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roret, T. et al., Evolutionary divergence of Ure2pA glutathione transferases in wood degrading fungi. Fungal Genet. Biol. (2015)

Release Date

2015-09-30

Peptides

PcUre2p8: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PcUre2p8

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