SMTL ID : 4zbz.1

Family 4 uracil-DNA glycosylase from Sulfolobus tokodaii (free form, X-ray wavelength=1.5418)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 12 residues within 4Å: Chain A: C.14, K.16, C.17, L.19, W.20, R.23, V.84, K.85, C.86, A.101, C.102, Y.105 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.14, A:C.17, A:C.86, A:C.102

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 7 residues within 4Å: Chain A: G.122, R.123, I.140, T.141, Y.163, H.164, L.174 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.123, A:H.164

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: A.35, E.36, I.37, L.73, Q.77, V.78 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.36, A:I.37, A:I.37, A:Q.77 Water bridges: A:Q.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawai, A. et al., Crystal structure of family 4 uracil-DNA glycosylase from Sulfolobus tokodaii and a function of tyrosine 170 in DNA binding. Febs Lett. (2015)

Release Date

2015-09-09

Peptides

Uracil-DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uracil-DNA glycosylase

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