SMTL ID : 4zdd.1

Structure of yeast D3,D2-enoyl-CoA isomerase bound to sulphate ion

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-trimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: A.90, F.117, R.120, G.145, L.146, F.170, L.173, E.178 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.90, A:L.146 Salt bridges: A:R.120 SO4.2: 6 residues within 4Å: Chain A: R.84, N.161, K.163, P.222, S.223, S.224 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.161, A:S.223, A:S.224 Water bridges: A:M.221 Salt bridges: A:R.84, A:K.163 SO4.3: 1 residues within 4Å: Chain A: R.238 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.238 SO4.4: 8 residues within 4Å: Chain B: A.90, F.117, R.120, G.145, L.146, F.170, L.173, E.178 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.90, B:L.146 Salt bridges: B:R.120 SO4.5: 6 residues within 4Å: Chain B: R.84, N.161, K.163, P.222, S.223, S.224 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.161, B:S.223, B:S.224 Water bridges: B:M.221 Salt bridges: B:R.84, B:K.163 SO4.6: 1 residues within 4Å: Chain B: R.238 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.238 SO4.7: 8 residues within 4Å: Chain C: A.90, F.117, R.120, G.145, L.146, F.170, L.173, E.178 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:A.90, C:L.146 Salt bridges: C:R.120 SO4.8: 6 residues within 4Å: Chain C: R.84, N.161, K.163, P.222, S.223, S.224 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.161, C:S.223, C:S.224 Water bridges: C:M.221 Salt bridges: C:R.84, C:K.163 SO4.9: 1 residues within 4Å: Chain C: R.238 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Onwukwe, G.U. et al., Structures of yeast peroxisomal Delta (3), Delta (2)-enoyl-CoA isomerase complexed with acyl-CoA substrate analogues: the importance of hydrogen-bond networks for the reactivity of the catalytic base and the oxyanion hole. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-11-11

Peptides

3,2-trans-enoyl-CoA isomerase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

3,2-trans-enoyl-CoA isomerase

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