SMTL ID : 4zed.1

PBP AccA from A. tumefaciens C58 in complex with agrocinopine-3'-O-benzoate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x AGW: [(2S,3S,4R,5R)-2,5-bis(hydroxymethyl)-2-[(2R,3R,4R,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4-[oxidanyl-[(2R,3R,4S,5S)-2,4,5-tris(oxidanyl)oxan-3-yl]oxy-phosphoryl]oxy-oxolan-3-yl] benzoate(Non-covalent)

AGW.1: 21 residues within 4Å: Chain A: L.14, P.15, N.16, I.24, S.25, N.26, Y.117, W.150, N.256, M.344, Y.347, Y.348, Y.374, F.379, N.389, W.390, S.391, N.392, G.393, E.406, E.482 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.347 Hydrogen bonds: A:N.16, A:I.24, A:N.26, A:N.26, A:N.256, A:Y.347, A:Y.348, A:Y.348, A:Y.374, A:Y.374, A:Y.374, A:N.389, A:W.390, A:S.391, A:G.393 Water bridges: A:S.25, A:G.377, A:F.379

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Q.266, E.267, V.268, W.386 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.268 Water bridges: A:Q.266, A:E.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

El Sahili, A. et al., A Pyranose-2-Phosphate Motif Is Responsible for Both Antibiotic Import and Quorum-Sensing Regulation in Agrobacterium tumefaciens. Plos Pathog. (2015)

Release Date

2015-08-19

Peptides

ABC transporter, substrate binding protein (Agrocinopines A and B): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ABC transporter, substrate binding protein (Agrocinopines A and B)

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