SMTL ID : 4zek.1

PBP AccA from A. tumefaciens C58 in complex with L-arabinose-2-isopropylphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x LAH: 2-O-[(R)-hydroxy(propan-2-yloxy)phosphoryl]-alpha-L-arabinopyranose(Non-covalent)

LAH.1: 14 residues within 4Å: Chain A: I.24, S.25, N.26, Y.117, W.150, N.256, Y.347, Y.348, W.390, S.391, N.392, G.393, E.406, E.482 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.26, A:N.26, A:N.256, A:Y.347, A:Y.348, A:Y.348, A:W.390, A:S.391, A:G.393

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: K.161, K.162, L.163 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.162 EDO.3: 4 residues within 4Å: Chain A: W.198, G.199, P.200, K.201 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.201 Water bridges: A:W.198, A:G.199 EDO.6: 2 residues within 4Å: Chain A: D.382, R.416 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.382

1 x TOE: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL(Non-covalent)

TOE.4: 3 residues within 4Å: Chain A: G.438, K.439, F.442 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 3 residues within 4Å: Chain A: N.321, E.324, R.327 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.321, A:R.327, A:R.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

El Sahili, A. et al., A Pyranose-2-Phosphate Motif Is Responsible for Both Antibiotic Import and Quorum-Sensing Regulation in Agrobacterium tumefaciens. Plos Pathog. (2015)

Release Date

2015-08-19

Peptides

ABC TRANSPORTER, SUBSTRATE BINDING PROTEIN (AGROCINOPINES A AND B): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ABC TRANSPORTER, SUBSTRATE BINDING PROTEIN (AGROCINOPINES A AND B)

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