- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x BGP: 6-O-phosphono-beta-D-galactopyranose(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 7 residues within 4Å:- Chain A: W.267, R.376, Y.377, Q.378
- Chain B: W.267, M.269
- Ligands: GOL.13
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.376, A:Q.378
GOL.3: 4 residues within 4Å:- Chain A: Y.270, Q.272, W.275, W.292
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.270, A:Q.272
- Water bridges: A:Y.270
GOL.4: 6 residues within 4Å:- Chain A: N.179, S.183, F.184, R.187, Q.257, W.261
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.179, A:S.183, A:S.183, A:R.187, A:Q.257
- Water bridges: A:N.258
GOL.5: 9 residues within 4Å:- Chain A: T.59, N.60, G.61, D.62, V.63, A.64, Y.444, R.455, E.460
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:G.58, A:N.60, A:V.63, A:A.64, A:Y.444, A:R.455, A:R.455, A:E.460
GOL.6: 5 residues within 4Å:- Chain A: M.139, D.140, A.141, Y.142, G.143
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:M.139
GOL.7: 5 residues within 4Å:- Chain A: D.155, R.156, V.159, S.218, Y.222
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.218
- Water bridges: A:R.156
GOL.8: 7 residues within 4Å:- Chain A: A.233, Y.234, S.235, N.306, Y.307, Y.308, Q.309
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:A.233, A:Y.234, A:Y.308, A:Q.309, A:Q.309
GOL.13: 7 residues within 4Å:- Chain A: W.267, M.269
- Chain B: W.267, R.376, Y.377, Q.378
- Ligands: GOL.2
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:W.267, B:R.376, B:Q.378
GOL.14: 5 residues within 4Å:- Chain B: N.179, S.183, R.187, Q.257, W.261
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.179, B:S.183, B:S.183, B:R.187
- Water bridges: B:A.233, B:Q.257
GOL.15: 6 residues within 4Å:- Chain B: Y.240, D.241, R.243, N.246, E.314, H.315
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.243, B:R.243, B:N.246, B:E.314
GOL.16: 6 residues within 4Å:- Chain B: L.394, E.395, P.396, G.397, D.398, R.464
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.397, B:D.398, B:D.398, B:D.398, B:R.464
GOL.17: 5 residues within 4Å:- Chain B: M.269, Y.270, Q.272, W.275, W.292
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.270, B:Q.272
- 4 x IMD: IMIDAZOLE(Non-covalent)
IMD.9: 6 residues within 4Å:- Chain A: G.53, R.54, T.55, F.56, T.328, L.441
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.328
- Water bridges: A:T.55, A:K.57, A:T.328
IMD.10: 3 residues within 4Å:- Chain A: P.52, G.53, R.54
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.54
IMD.11: 3 residues within 4Å:- Chain A: N.276, Y.277, S.280
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.280
IMD.18: 3 residues within 4Å:- Chain B: T.354, T.355, E.390
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.390
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lansky, S. et al., Structure of Gan1D, a putative 6-phospho-beta-galactosidase from Geobacillus stearothermophilus, in complex with 6-phospho-beta-galactose. To Be Published
- Release Date
- 2016-06-29
- Peptides
- Putative 6-phospho-beta-galactobiosidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x BGP: 6-O-phosphono-beta-D-galactopyranose(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 4 x IMD: IMIDAZOLE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lansky, S. et al., Structure of Gan1D, a putative 6-phospho-beta-galactosidase from Geobacillus stearothermophilus, in complex with 6-phospho-beta-galactose. To Be Published
- Release Date
- 2016-06-29
- Peptides
- Putative 6-phospho-beta-galactobiosidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B