SMTL ID : 4zgf.1

Crystal structure of a duf4847 family protein (BVU_2626) from Bacteroides vulgatus ATCC 8482 at 1.00 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.141 Ligands: CA.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.141, A:D.141, H2O.5 CA.2: 2 residues within 4Å: Chain A: D.141 Ligands: CA.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.141, A:D.141, H2O.7 CA.3: 2 residues within 4Å: Chain A: D.82, D.85 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.82, A:D.85, H2O.1, H2O.4, H2O.5

4 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.4: 9 residues within 4Å: Chain A: W.22, D.23, G.83, K.84, D.85, R.86, F.114, Y.115, Q.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.83, A:R.86, A:R.86 P6G.5: 4 residues within 4Å: Chain A: S.8, G.9, T.10, H.137 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.10 P6G.6: 5 residues within 4Å: Chain A: Q.80, T.87, V.88, N.89, I.113 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.89, A:N.89 P6G.7: 7 residues within 4Å: Chain A: T.65, F.66, T.67, E.76, G.77, T.78, T.93 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.76, A:E.76

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.8: 3 residues within 4Å: Chain A: D.51, G.55, K.139 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.51 Salt bridges: A:K.139 ACT.9: 4 residues within 4Å: Chain A: D.51, H.54, Q.140, D.141 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.50, A:D.51 Salt bridges: A:H.54

1 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.10: 4 residues within 4Å: Chain A: V.121, A.136, N.138, Q.140 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.121, A:A.136 Hydrogen bonds: A:N.138, A:Q.140 Water bridges: A:H.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a duf4847 family protein (BVU_2626) from Bacteroides vulgatus ATCC 8482 at 1.00 A resolution. To be published

Release Date

2015-05-06

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein