SMTL ID : 4zjy.1

Structure of Acetobacter aceti PurE-S57N

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-octamer

Ligands

4 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.1: 2 residues within 4Å: Chain A: R.61 Chain E: K.142 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain E Hydrogen bonds: A:R.61, A:R.61, E:K.142 BCT.5: 2 residues within 4Å: Chain C: R.61 Chain G: K.142 3 PLIP interactions: 1 interactions with chain G, 2 interactions with chain C Hydrogen bonds: G:K.142, C:R.61, C:R.61 BCT.9: 2 residues within 4Å: Chain C: K.142 Chain E: R.61 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:R.61, E:R.61, C:K.142 BCT.13: 2 residues within 4Å: Chain A: K.142 Chain G: R.61 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain A Hydrogen bonds: G:R.61, G:R.61, A:K.142

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: M.116 Chain B: M.116 Chain F: M.116 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain C: M.116 Chain D: M.116 Chain H: M.116 No protein-ligand interaction detected (PLIP) EDO.10: 3 residues within 4Å: Chain D: M.116 Chain E: M.116 Chain F: M.116 No protein-ligand interaction detected (PLIP) EDO.14: 3 residues within 4Å: Chain B: M.116 Chain G: M.116 Chain H: M.116 No protein-ligand interaction detected (PLIP)

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain B: N.156, A.158, R.162 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.156, B:N.156 Water bridges: B:R.162 Salt bridges: B:R.162 ACT.7: 3 residues within 4Å: Chain D: N.156, A.158, R.162 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.156, D:N.156 Water bridges: D:R.162 Salt bridges: D:R.162 ACT.11: 3 residues within 4Å: Chain F: N.156, A.158, R.162 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:N.156, F:N.156 Water bridges: F:R.162 Salt bridges: F:R.162 ACT.15: 3 residues within 4Å: Chain H: N.156, A.158, R.162 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:N.156, H:N.156 Water bridges: H:R.162 Salt bridges: H:R.162

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain B: R.39, H.40 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.39, B:H.40 SO4.8: 2 residues within 4Å: Chain D: R.39, H.40 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.39, D:H.40 SO4.12: 2 residues within 4Å: Chain F: R.39, H.40 2 PLIP interactions: 2 interactions with chain F Salt bridges: F:R.39, F:H.40 SO4.16: 2 residues within 4Å: Chain H: R.39, H.40 2 PLIP interactions: 2 interactions with chain H Salt bridges: H:R.39, H:H.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sullivan, K.L. et al., Serine mutants of Acetobacter aceti PurE. To be published

Release Date

2016-05-11

Peptides

N5-carboxyaminoimidazole ribonucleotide mutase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

N5-carboxyaminoimidazole ribonucleotide mutase