SMTL ID : 4zkj.1

Crystal structure of CRISPR-associated protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: K.95, K.277, N.280, N.281 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.95, A:N.280 Water bridges: A:K.277 GOL.2: 10 residues within 4Å: Chain A: S.168, D.170, L.171, H.173, P.174, I.175, N.176, A.177 Chain B: M.97, M.200 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.168, A:I.175, A:N.176, A:N.176, A:A.177 GOL.3: 7 residues within 4Å: Chain A: F.203 Chain B: F.159, R.169, N.176, L.179, Y.183, R.225 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.169, B:N.176, B:N.176, B:R.225 GOL.4: 6 residues within 4Å: Chain B: K.104, F.203, G.204, L.205, K.206, A.208 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.205 Water bridges: B:G.204 GOL.5: 3 residues within 4Å: Chain B: N.160, D.166, R.169 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.160, B:D.166, B:R.169, B:R.169 Water bridges: B:D.166, B:D.166 GOL.6: 10 residues within 4Å: Chain A: D.180, Y.183, R.225 Chain B: Q.202, F.203, A.208, Q.210, F.211, N.212, N.215 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.210, B:N.212, B:N.215, A:D.180, A:R.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ka, D. et al., Crystal Structure of Streptococcus pyogenes Cas1 and Its Interaction with Csn2 in the Type II CRISPR-Cas System. Structure (2016)

Release Date

2016-01-13

Peptides

CRISPR-associated protein Cas1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CRISPR-associated protein Cas1