- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLC- BGC: beta-D-glucopyranose-(1-3)-alpha-D-glucopyranose(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 2 residues within 4Å:- Chain A: D.648, T.650
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.648, H2O.4, H2O.6, H2O.6, H2O.9
MG.7: 2 residues within 4Å:- Chain B: D.648, T.650
6 PLIP interactions:2 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.648, B:T.650, H2O.13, H2O.13, H2O.14, H2O.19
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 8 residues within 4Å:- Chain A: R.143, E.214, N.218, Y.564, N.566, L.568
- Chain B: T.207, N.209
10 PLIP interactions:8 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.143, A:R.143, A:N.218, A:Y.564, A:N.566
- Water bridges: A:R.213, A:E.214, A:L.568, B:V.208, B:N.209
GOL.8: 8 residues within 4Å:- Chain A: T.207, N.209
- Chain B: R.143, E.214, N.218, Y.564, N.566, L.568
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.143, B:R.143, B:N.218, B:N.566
- Water bridges: B:E.214, A:N.209
- 4 x BGC: beta-D-glucopyranose(Non-covalent)
BGC.5: 9 residues within 4Å:- Chain A: F.238, W.271, W.409, E.473
- Chain B: R.572, Y.583
- Ligands: GLC-BGC.1, GLC-BGC.1, BGC.6
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.572, B:R.572, A:E.473, A:E.473
- Salt bridges: B:R.572
BGC.6: 15 residues within 4Å:- Chain A: L.61, D.91, F.135, R.149, K.191, H.192, M.235, F.238, W.271, M.302, W.409, E.473
- Ligands: GLC-BGC.1, GLC-BGC.1, BGC.5
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:R.149, A:R.149, A:K.191, A:H.192, A:H.192, A:W.271
- Water bridges: A:D.91, A:D.91, A:K.191
BGC.9: 9 residues within 4Å:- Chain A: R.572, Y.583
- Chain B: F.238, W.271, W.409, E.473
- Ligands: GLC-BGC.2, GLC-BGC.2, BGC.10
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.572, A:R.572, B:E.473, B:E.473
- Salt bridges: A:R.572
BGC.10: 15 residues within 4Å:- Chain B: L.61, D.91, F.135, R.149, K.191, H.192, M.235, F.238, W.271, M.302, W.409, E.473
- Ligands: GLC-BGC.2, GLC-BGC.2, BGC.9
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:R.149, B:R.149, B:K.191, B:H.192, B:W.271
- Water bridges: B:D.91, B:D.91
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakajima, M. et al., Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua. Plos One (2016)
- Release Date
- 2016-05-18
- Peptides
- Lin1840 protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLC- BGC: beta-D-glucopyranose-(1-3)-alpha-D-glucopyranose(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 4 x BGC: beta-D-glucopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakajima, M. et al., Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua. Plos One (2016)
- Release Date
- 2016-05-18
- Peptides
- Lin1840 protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B