SMTL ID : 4zpl.1

Crystal Structure of Protocadherin Beta 1 EC1-3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

monomer

Ligands

3 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 2 residues within 4Å: Chain A: N.141, T.143 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-FUC.2: 3 residues within 4Å: Chain A: N.181, T.183, N.199 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-FUC.3: 2 residues within 4Å: Chain A: N.229, R.276 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.276

6 x CA: CALCIUM ION(Non-covalent)

CA.4: 7 residues within 4Å: Chain A: E.9, E.65, D.97, I.98, D.100, D.133 Ligands: CA.5 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.9, A:E.65, A:E.65, A:D.97, A:I.98 CA.5: 7 residues within 4Å: Chain A: E.9, E.10, D.63, E.65, D.100, N.101 Ligands: CA.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.9, A:D.63, A:E.65, A:D.100 CA.6: 6 residues within 4Å: Chain A: N.99, N.101, D.131, D.133, N.137, D.188 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.131, A:D.131, A:D.133, A:N.137, A:D.188 CA.7: 6 residues within 4Å: Chain A: E.116, E.175, D.206, V.207, D.209, D.242 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.116, A:E.175, A:V.207, A:D.209, A:D.242 CA.8: 4 residues within 4Å: Chain A: E.116, D.173, E.175, D.209 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.116, A:D.173, A:E.175, A:D.209 CA.9: 6 residues within 4Å: Chain A: N.208, H.210, D.240, D.242, N.246, D.295 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.210, A:D.240, A:D.240, A:D.242, A:D.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rubinstein, R. et al., Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions. Cell (2015)

Release Date

2015-10-28

Peptides

Protein Pcdhb1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein Pcdhb1