SMTL ID : 4zpn.2 (1 other biounit)

Crystal Structure of Protocadherin Gamma C5 EC1-3 with extended N-terminus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

monomer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 3 residues within 4Å: Chain A: Q.219, N.241, T.243 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.241

8 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: N.212, N.214, D.244, D.246, N.250, D.300 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.214, A:D.244, A:D.246, A:N.250, A:D.300 CA.3: 6 residues within 4Å: Chain A: E.120, D.177, E.179, D.213, N.214 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.120, A:D.177, A:E.179, A:D.213, A:D.213 CA.4: 8 residues within 4Å: Chain A: E.120, E.179, D.210, V.211, D.213, N.214, D.246 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.120, A:E.179, A:D.210, A:V.211, A:D.213 CA.5: 6 residues within 4Å: Chain A: N.103, N.105, D.135, D.137, N.141, D.192 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.105, A:D.135, A:D.137, A:N.141, A:D.192 CA.6: 8 residues within 4Å: Chain A: E.13, E.69, D.101, L.102, D.104, N.105, D.137 Ligands: CA.7 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.13, A:E.13, A:L.102, A:D.104, A:D.137 CA.7: 7 residues within 4Å: Chain A: E.13, E.14, D.67, E.69, D.104, N.105 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.13, A:D.67, A:E.69, A:D.104, A:D.104 CA.8: 6 residues within 4Å: Chain A: E.229, E.287, D.318, A.319, D.321 Ligands: CA.9 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.229, A:E.287, A:E.287, A:D.318, A:A.319 CA.9: 5 residues within 4Å: Chain A: E.229, D.285, E.287, D.321 Ligands: CA.8 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.229, A:D.285, A:D.285, A:E.287, A:D.321

2 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.10: 3 residues within 4Å: Chain A: A.197, R.198, S.199 No protein-ligand interaction detected (PLIP) MAN.11: 2 residues within 4Å: Chain A: T.201, L.203 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rubinstein, R. et al., Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions. Cell (2015)

Release Date

2015-10-28

Peptides

MCG133388, isoform CRA_f: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

MCG133388, isoform CRA_f

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