SMTL ID : 4zr5.3 (2 other biounits)

Soluble rabbit neprilysin in complex with phosphoramidon

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.91, A.94, E.450 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: K.132, N.271, N.274, E.275 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.132

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: H.530, H.534, E.593, H.658 Ligands: RDF.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Ligand interactions Metal complexes: A:H.530, A:E.593, A:E.593, RDF.4, RDF.4

1 x RDF: N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN(Non-covalent)

RDF.4: 17 residues within 4Å: Chain A: R.49, F.53, D.54, V.488, N.489, A.490, F.491, I.505, V.527, H.530, E.531, H.534, E.593, W.640, H.658, R.664 Ligands: ZN.3 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.53, A:F.53, A:F.53, A:I.505, A:V.527, A:V.527, A:W.640 Hydrogen bonds: A:V.488, A:N.489, A:N.489, A:N.489, A:R.664, A:R.664 Water bridges: A:R.49, A:Y.648, A:D.656 Salt bridges: A:H.658, A:H.658

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain A: N.231, K.300 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Labiuk, S.L. et al., Structures of soluble rabbit neprilysin complexed with phosphoramidon or thiorphan. Acta Crystallogr.,Sect.F (2019)

Release Date

2016-06-08

Peptides

Neprilysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Neprilysin

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